CF504295

Overview
NameCF504295
Unique NameCF504295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504295_ssr72 microsatellite CF504295_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:6..253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_ANOGA (40S ribosomal protein S17 OS=Anopheles gambiae GN=RpS17 PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 3.807e-15
Identity = 36/50 (72.00%), Postives = 47/50 (94.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKT+KK+S+ +IE+YY+R+T+DF TNK+I+EEVAIIP+K LRNKI
Sbjct:    1 MGRVRTKTIKKASKVIIEKYYTRLTMDFDTNKRIVEEVAIIPTKPLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 4.973e-15
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKI
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_NEUCR (40S ribosomal protein S17 OS=Neurospora crassa GN=rps-17 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.494e-15
Identity = 37/50 (74.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKKS++ +IERYY ++TLDF TNK+I +E+AII SKRLRNKI
Sbjct:    1 MGRVRTKTVKKSAKVIIERYYPKLTLDFETNKRICDEIAIIASKRLRNKI 50          
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.494e-15
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 2
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKI
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKI 50          
The following BLAST results are available for this feature:
BLAST of CF504295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS17_HUMAN2.915e-1572.0040S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA2.915e-1572.0040S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR2.915e-1572.0040S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA2.915e-1572.0040S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK2.915e-1572.0040S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA2.915e-1572.0040S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17_ANOGA3.807e-1572.0040S ribosomal protein S17 OS=Anopheles gambiae GN=... [more]
RS17_RAT4.973e-1572.0040S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]
RS17_NEUCR6.494e-1574.0040S ribosomal protein S17 OS=Neurospora crassa GN=... [more]
RS17B_SCHPO6.494e-1576.0040S ribosomal protein S17-B OS=Schizosaccharomyces... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-784 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504295 ID=CF504295; Name=CF504295; organism=Citrus sinensis; type=EST; length=248bp
CTTCGCTTTAGCTGCCGCAATCTCTTGACATCTCAAGCTCTTCTGCTTCA
CCGTCTTTGTCTTCTTCAAGACAGCAGCAGCAGCTTCTTAAACTGAAATG
GGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTCGCCAGGTGATTGA
GAGGTACTACTCAAGAATGACACTGGACTTCCATACCAACAAGAAGATTT
TGGAGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCGTAACAAAATTG
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