CF504295

Overview
NameCF504295
Unique NameCF504295
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504295_ssr72 microsatellite CF504295_ssr72:72..83. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:6..253. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.494e-15
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKI
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKI 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_SPOFR (40S ribosomal protein S17 OS=Spodoptera frugiperda GN=RpS17 PE=2 SV=3)

HSP 1 Score: 78.5666 bits (192), Expect = 1.108e-14
Identity = 36/50 (72.00%), Postives = 46/50 (92.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVKK+++ +IE+YY+R+TLDF TNK+I EE+AIIP+K LRNKI
Sbjct:    1 MGRVRTKTVKKAAKIIIEKYYTRLTLDFDTNKRICEEIAIIPTKPLRNKI 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.890e-14
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKV 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 77.7962 bits (190), Expect = 1.890e-14
Identity = 33/50 (66.00%), Postives = 45/50 (90.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKV 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17B_YEAST (40S ribosomal protein S17-B OS=Saccharomyces cerevisiae GN=RPS17B PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKI
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKI 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17A_YEAST (40S ribosomal protein S17-A OS=Saccharomyces cerevisiae GN=RPS17A PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.225e-13
Identity = 34/50 (68.00%), Postives = 44/50 (88.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKTVK++S+ +IERYY ++TLDF TNK++ +E+A I SKRLRNKI
Sbjct:    1 MGRVRTKTVKRASKALIERYYPKLTLDFQTNKRLCDEIATIQSKRLRNKI 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_CAEEL (40S ribosomal protein S17 OS=Caenorhabditis elegans GN=rps-17 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.600e-13
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            M RVRTKTVKK+SR +IE+YY+RMT DFH NK++ +EVAII SK LRNKI
Sbjct:    1 MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKI 50
[Close]
BLAST of CF504295 vs. ExPASy Swiss-Prot
Match: RS17_DICDI (40S ribosomal protein S17 OS=Dictyostelium discoideum GN=rps17 PE=3 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 1.497e-11
Identity = 31/50 (62.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:   98 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKI 247
            MGRVRTKT+K++S+ +IE++Y R+T DF TNK+  +++A IPSKRLRNKI
Sbjct:    1 MGRVRTKTIKRASKLLIEKHYPRLTNDFDTNKRTCDKLAKIPSKRLRNKI 50
The following BLAST results are available for this feature:
BLAST of CF504295 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
RS17A_SCHPO6.494e-1576.0040S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_SPOFR1.108e-1472.0040S ribosomal protein S17 OS=Spodoptera frugiperda... [more]
RS17_THEPA1.890e-1466.0040S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN1.890e-1466.0040S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17B_YEAST1.225e-1368.0040S ribosomal protein S17-B OS=Saccharomyces cerev... [more]
RS17A_YEAST1.225e-1368.0040S ribosomal protein S17-A OS=Saccharomyces cerev... [more]
RS17_CAEEL1.600e-1372.0040S ribosomal protein S17 OS=Caenorhabditis elegan... [more]
RS17_DICDI1.497e-1162.0040S ribosomal protein S17 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-784 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_F07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504295 ID=CF504295; Name=CF504295; organism=Citrus sinensis; type=EST; length=248bp
CTTCGCTTTAGCTGCCGCAATCTCTTGACATCTCAAGCTCTTCTGCTTCA
CCGTCTTTGTCTTCTTCAAGACAGCAGCAGCAGCTTCTTAAACTGAAATG
GGTCGTGTTCGTACCAAGACCGTGAAGAAGTCCTCTCGCCAGGTGATTGA
GAGGTACTACTCAAGAATGACACTGGACTTCCATACCAACAAGAAGATTT
TGGAGGAGGTTGCTATCATCCCCTCGAAGAGGCTGCGTAACAAAATTG
back to top