CF504298

Overview
NameCF504298
Unique NameCF504298
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504298_ssr50 microsatellite CF504298_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4194 contig Csv1_Contig4194:28..540. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_MOUSE (40S ribosomal protein S17 OS=Mus musculus GN=Rps17 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_ICTPU (40S ribosomal protein S17 OS=Ictalurus punctatus GN=rps17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_HUMAN (40S ribosomal protein S17 OS=Homo sapiens GN=RPS17 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_FELCA (40S ribosomal protein S17 OS=Felis catus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_CRIGR (40S ribosomal protein S17 OS=Cricetulus griseus GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_COTJA (40S ribosomal protein S17 OS=Coturnix coturnix japonica GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_CHICK (40S ribosomal protein S17 OS=Gallus gallus GN=RPS17 PE=2 SV=3)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_CANFA (40S ribosomal protein S17 OS=Canis familiaris GN=RPS17 PE=2 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/122 (63.11%), Postives = 100/122 (81.97%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17A_SCHPO (40S ribosomal protein S17-A OS=Schizosaccharomyces pombe GN=rps17a PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.569e-39
Identity = 77/114 (67.54%), Postives = 96/114 (84.21%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDI 417
            MGRVRTKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG++THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D + VD++T DML +LG   I
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEVDRVNVDQDTKDMLKSLGYDQI 114
[Close]
BLAST of CF504298 vs. ExPASy Swiss-Prot
Match: RS17_RAT (40S ribosomal protein S17 OS=Rattus norvegicus GN=Rps17 PE=2 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 1.121e-38
Identity = 77/122 (63.11%), Postives = 99/122 (81.15%), Query Frame = 1 
Query:   76 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 441
            MGRVRTKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKNLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122
The following BLAST results are available for this feature:
BLAST of CF504298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS17_MOUSE6.569e-3963.1140S ribosomal protein S17 OS=Mus musculus GN=Rps17... [more]
RS17_ICTPU6.569e-3963.1140S ribosomal protein S17 OS=Ictalurus punctatus G... [more]
RS17_HUMAN6.569e-3963.1140S ribosomal protein S17 OS=Homo sapiens GN=RPS17... [more]
RS17_FELCA6.569e-3963.1140S ribosomal protein S17 OS=Felis catus GN=RPS17 ... [more]
RS17_CRIGR6.569e-3963.1140S ribosomal protein S17 OS=Cricetulus griseus GN... [more]
RS17_COTJA6.569e-3963.1140S ribosomal protein S17 OS=Coturnix coturnix jap... [more]
RS17_CHICK6.569e-3963.1140S ribosomal protein S17 OS=Gallus gallus GN=RPS1... [more]
RS17_CANFA6.569e-3963.1140S ribosomal protein S17 OS=Canis familiaris GN=R... [more]
RS17A_SCHPO6.569e-3967.5440S ribosomal protein S17-A OS=Schizosaccharomyces... [more]
RS17_RAT1.121e-3863.1140S ribosomal protein S17 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-787 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_F10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504298 ID=CF504298; Name=CF504298; organism=Citrus sinensis; type=EST; length=513bp
TCTTGACATCTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGAC
AGCAGCAGCAGCTTCTTAAACTGAAATGGGTCGTGTTCGTACCAAGACCG
TGAAGAAGTCCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACA
CTGGACTTCCATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCATCCC
CTCGAAGAGGCTGCGTAACAAAATTGCTGGGTTCTCAACCCATTTGATGA
AGAGGATTCAGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAA
GAGGAGCGCGAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAA
GACTGATGAAATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTC
TTGGCATGTCTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATG
ATTGCTCCTCCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAA
TTGAGGCTTTGTG
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