CF504301

Overview
NameCF504301
Unique NameCF504301
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length460
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF504301_ssr228 microsatellite CF504301_ssr228:228..251. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig534 contig Csv1_Contig534:1..465. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF504301 vs. ExPASy Swiss-Prot
Match: P2B15_ARATH (F-box protein PP2-B15 OS=Arabidopsis thaliana GN=PP2B15 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 3.827e-20
Identity = 51/117 (43.59%), Postives = 67/117 (57.26%), Query Frame = 3
Query:   78 PKVALPTPISFTTPRDACRLSSVSTIFKSAAESDAVWESFLPPDYXXXXXXXXXXXXXXXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIIWSSTSAYWRW 428
            P+  + T +SFTTP D    ++VS++F+ A +SD VWE FLP DY                   KKELY  LC + ILID G+K F ++K SGK  Y++S+RDL I WS    YW W
Sbjct:    3 PEACVATILSFTTPADTISSAAVSSVFRVAGDSDFVWEKFLPTDY---CHVISRSTDPHRIFSSKKELYRCLCES-ILIDNGRKIFKIEKLSGKISYILSSRDLSITWSDQRHYWSW 115          
BLAST of CF504301 vs. ExPASy Swiss-Prot
Match: PP2B7_ARATH (F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP2B7 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 9.425e-19
Identity = 49/121 (40.50%), Postives = 69/121 (57.02%), Query Frame = 3
Query:   78 PKVALPTPISFTTPRDACRLSSVSTIFKSAAESDAVWESFLPPDYXXXXXXXXXXXXXXXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIIWSSTSAYWRWISIP 440
            P+  +   ISFT+PRDAC  + VS  F+SA +SD VWE F+PP+Y                   KKEL+F+LC   +LI+  KK   ++K +GK+C M+SA  L +   ST   W+WI+ P
Sbjct:   44 PEECISLIISFTSPRDACVFALVSKTFESAVQSDIVWEKFIPPEY-------ESLLSRSQHFSSKKELFFALCDESVLINVSKKDLWIEKATGKRCMMLSASALNL---STHHTWKWITNP 154          
BLAST of CF504301 vs. ExPASy Swiss-Prot
Match: PP2B5_ARATH (F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP2B5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 4.678e-18
Identity = 57/115 (49.57%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  105 SFT-TPRDACRLSSVSTIFKSAAESDAVWESFLPP-DYXXXXXXXXXXXXXXXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIIWSSTSAYWRWISIPE 443
            SFT TPRDA   + VS  F     SD+VWE FLPP DY                   KKELYF+LC +P     GK SF LDK SGKKC M+SA+ LLI       YW+WISIPE
Sbjct:   47 SFTSTPRDAFLAALVSKSFGLQFNSDSVWEKFLPPPDYVSLLPKSRVFSS-------KKELYFALC-DPFPNHNGKMSFRLDKASGKKCVMLSAKKLLISRVVNPKYWKWISIPE 153          
BLAST of CF504301 vs. ExPASy Swiss-Prot
Match: P2B14_ARATH (F-box protein PP2-B14 OS=Arabidopsis thaliana GN=PP2B14 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.032e-17
Identity = 46/122 (37.70%), Postives = 69/122 (56.56%), Query Frame = 3
Query:   78 PKVALPTPISFTTPRDACRLSSVSTIFKSAAESDAVWESFLPPDYXXXXXXXXXXXXXXXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIIWSSTSAYWRWISIPE 443
            P+  +   ++FT+P DA   S VS++F+ A +SD VWE FLP DY                   KKE+Y  LC + +LID  +K F ++K SGK  Y++SARD+ I  S  ++YW W ++ +
Sbjct:    5 PEACIANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSDY---KSLISQSTDHHWNISSKKEIYRCLC-DSLLIDNARKLFKINKFSGKISYVLSARDISITHSDHASYWSWSNVSD 122          

HSP 2 Score: 21.557 bits (44), Expect = 2.032e-17
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 2
Query:   65 MELLPEGCIAN 97
            M +LPE CIAN
Sbjct:    1 MMMLPEACIAN 11          
BLAST of CF504301 vs. ExPASy Swiss-Prot
Match: P2B13_ARATH (F-box protein PP2-B13 OS=Arabidopsis thaliana GN=PP2B13 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 2.173e-15
Identity = 44/122 (36.07%), Postives = 68/122 (55.74%), Query Frame = 3
Query:   78 PKVALPTPISFTTPRDACRLSSVSTIFKSAAESDAVWESFLPPDYXXXXXXXXXXXXXXXXXXXKKELYFSLCHNPILIDEGKKSFSLDKQSGKKCYMISARDLLIIWSSTSAYWRWISIPE 443
            P+  +   ++FT+P DA   S VS++F+ A +SD VWE FLP  Y                   KKE+Y  LC + +LID  +K F ++K SGK  Y++SARD+ I +S  ++Y  W ++ +
Sbjct:    5 PEACVANILAFTSPADAFSSSEVSSVFRLAGDSDFVWEKFLPSHY---KSLISQSTDHHRIFSSKKEIYRCLC-DSLLIDNARKLFKINKFSGKISYILSARDISITYSDHASYCSWSNVSD 122          
The following BLAST results are available for this feature:
BLAST of CF504301 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
P2B15_ARATH3.827e-2043.59F-box protein PP2-B15 OS=Arabidopsis thaliana GN=P... [more]
PP2B7_ARATH9.425e-1940.50F-box protein PP2-B7 OS=Arabidopsis thaliana GN=PP... [more]
PP2B5_ARATH4.678e-1849.57F-box protein PP2-B5 OS=Arabidopsis thaliana GN=PP... [more]
P2B14_ARATH2.032e-1737.70F-box protein PP2-B14 OS=Arabidopsis thaliana GN=P... [more]
P2B13_ARATH2.173e-1536.07F-box protein PP2-B13 OS=Arabidopsis thaliana GN=P... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_119000-790 Immature Ovaries from field-collected Valencia Sweet Orange (Citrus sinensis (L.) Osbeck) Citrus sinensis cDNA clone MVF-16_G01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF504301 ID=CF504301; Name=CF504301; organism=Citrus sinensis; type=EST; length=460bp
CCTCGTGCCGCGTCTGCGCATCTGTCTCTCCATCTCCCTTTTTCTAATTT
CCACGGAAGCAGAAATGGAGCTTTTACCCGAAGGTTGCATTGCCAACGCC
TATTTCCTTTACTACTCCTCGTGACGCATGCAGATTGTCTTCAGTTTCAA
CTATCTTCAAGTCGGCGGCCGAATCCGACGCCGTTTGGGAGAGCTTTTTG
CCGCCCGATTACTCTACTCTTCTTTCGTCTTCTTCTTCTTCTTCTTCTTC
TTCGCTGCGTTCCTCCTCTAAGAAGGAGCTCTATTTTAGCCTCTGTCATA
ACCCTATCCTCATCGACGAGGGCAAAAAGAGCTTTTCACTGGACAAGCAG
AGTGGGAAGAAATGTTACATGATATCCGCTAGGGATCTTCTGATTATCTG
GAGCTCTACATCTGCTTATTGGAGATGGATCTCTATTCCTGAGGTTTCTG
GAGGTGGCTG
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