CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJB (ATP synthase gamma chain OS=Synechococcus sp. GN=atpG PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 8.093e-26
Identity = 61/112 (54.46%), Postives = 79/112 (70.54%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRL    G+  V R  V          M+FEQDP QILDA++PLY+N+Q+LRA QE+ ASE+AARM+ M+  +DNA EL + L +AYN+ RQ  IT E+LE+VAGAEAL
Sbjct:  203 DEIFRLLVRGGEFTVERSKVIAAVSAPPQDMIFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAMNNASDNASELIRTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_TRIEI (ATP synthase gamma chain OS=Trichodesmium erythraeum (strain IMS101) GN=atpG PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.355e-25
Identity = 59/112 (52.68%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT   G+  V+R++V+         M+FEQDP QILDA++PL++ +Q+LRA+QES ASE+A+RM+ MS  +DNA EL   L++AYN+ RQ  IT E+LE+V GA AL
Sbjct:  203 DEIFRLTSKGGEFEVSRETVSAAVKSFPRDMIFEQDPIQILDALLPLFLTNQLLRAWQESSASELASRMTAMSNASDNASELAGTLTLAYNKARQAAITQEILEVVGGANAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP8 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 8801) GN=atpG PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.075e-25
Identity = 57/112 (50.89%), Postives = 81/112 (72.32%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRL   +GK+ V R+++          M+FEQDP QILDA++PLY+N+Q+LR  QE+ ASE+AARM+ MS  +DNA +L   L+++YN+ RQ  IT +L+E+VAGA AL
Sbjct:  203 DEVFRLITRDGKLRVERETIAQEVSSFPQDMIFEQDPIQILDALLPLYINNQLLRGLQEAAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_ACAM1 (ATP synthase gamma chain OS=Acaryochloris marina (strain MBIC 11017) GN=atpG PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.851e-25
Identity = 61/113 (53.98%), Postives = 82/113 (72.57%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRLT   G+  V R+ +     +  P  M+FEQ+P QILDA++PLY+N+Q+LRA QES ASE+AARM+ M+  +DNA EL   L+++YN+ RQ  IT ELLE+V GAEAL
Sbjct:  204 DEVFRLTTRGGQFQVERERMERGTPQEMPSDMIFEQNPIQILDALLPLYLNNQLLRALQESAASELAARMTAMNNASDNASELIGTLTLSYNKARQAAITQELLEVVGGAEAL 316          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROMT (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL2A) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.400e-24
Identity = 55/112 (49.11%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  237 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 569
            DE+FRLT  + ++I+ +D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRA QES ASE+A+RM+ M+  +DNA EL KNL++ YN+ RQ  IT E+LE+V GA A
Sbjct:  205 DEIFRLTTKDSQLIIEKDAAPSNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROM1 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL1A) GN=atpG PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.400e-24
Identity = 55/112 (49.11%), Postives = 82/112 (73.21%), Query Frame = -1
Query:  237 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEA 569
            DE+FRLT  + ++I+ +D+   N+    P  ++FEQ P Q+L+A++PLY+ +Q+LRA QES ASE+A+RM+ M+  +DNA EL KNL++ YN+ RQ  IT E+LE+V GA A
Sbjct:  205 DEIFRLTTKDSQLIIEKDAAPTNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAMNNASDNAKELAKNLTIDYNKARQAAITQEILEVVGGASA 316          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP2 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 4.441e-24
Identity = 58/112 (51.79%), Postives = 77/112 (68.75%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE F L    GK  V R+ V     EL   M+FEQDP  IL+A++PLY+++Q+LRA QE  ASE+AARM+ M+  +DNA +L K L+++YN+ RQ  IT EL E+VAGA AL
Sbjct:  203 DETFNLITRGGKFQVEREKVATEVKELPADMIFEQDPKDILNALLPLYLSNQLLRALQEGAASELAARMTAMNNASDNASDLMKTLTLSYNKARQAAITQELSEVVAGANAL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNY3 (ATP synthase gamma chain OS=Synechocystis sp. (strain PCC 6803) GN=atpG PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.574e-24
Identity = 59/112 (52.68%), Postives = 77/112 (68.75%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FRL    GK  V R+ V          M+FEQDP QIL+A++PLY  +Q+LRA QES ASE+AARM+ MS  +DNA +L   L+++YN+ RQ  IT ELLE+VAGA +L
Sbjct:  203 DEIFRLITRGGKFQVEREKVEAPVESFPQDMIFEQDPVQILEALLPLYNTNQLLRALQESAASELAARMTAMSNASDNAGQLIGTLTLSYNKARQAAITQELLEVVAGANSL 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_SYNR3 (ATP synthase gamma chain OS=Synechococcus sp. (strain RCC307) GN=atpG PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.878e-23
Identity = 52/112 (46.43%), Postives = 79/112 (70.54%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+FR    EG++ V R S +  + +L   ++FEQ P+Q+LD ++PLY+ +Q+LR+ QES ASE+A+RM+ M+  +DNA  L K L++ YN+ RQ  IT E+LE+V GA A+
Sbjct:  203 DEIFRFVTKEGELGVERSSASNQEDKLKSDLVFEQSPSQLLDVLLPLYLQNQVLRSLQESAASELASRMTAMNNASDNAKALAKELTLDYNKARQAAITQEILEVVGGASAM 314          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PHATR (ATP synthase gamma chain, chloroplastic OS=Phaeodactylum tricornutum GN=ATPC PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 8.375e-23
Identity = 57/113 (50.44%), Postives = 76/113 (67.26%), Query Frame = -1
Query:  234 DELFRLTPNEGKMIVARDSVTFNKGELSPL-MLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 569
            DE+F+LT   G+  V R  +     +  P  M+FEQDP QI++A++PLY+N QILR  QES ASE+AARM  M   +DNA  L K L++ YN+ RQ  +T ELLEI++GA AL
Sbjct:  257 DEVFQLTSESGQFGVERTELDVAAPQEFPNDMIFEQDPIQIVNAILPLYLNGQILRTLQESVASELAARMQSMQSASDNAGSLAKQLNLEYNRARQAAVTQELLEIISGASAL 369          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_SYNJB8.093e-2654.46ATP synthase gamma chain OS=Synechococcus sp. GN=a... [more]
ATPG_TRIEI2.355e-2552.68ATP synthase gamma chain OS=Trichodesmium erythrae... [more]
ATPG_CYAP83.075e-2550.89ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_ACAM16.851e-2553.98ATP synthase gamma chain OS=Acaryochloris marina (... [more]
ATPG_PROMT3.400e-2449.11ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM13.400e-2449.11ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNP24.441e-2451.79ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_SYNY37.574e-2452.68ATP synthase gamma chain OS=Synechocystis sp. (str... [more]
ATPG_SYNR32.878e-2346.43ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PHATR8.375e-2350.44ATP synthase gamma chain, chloroplastic OS=Phaeoda... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
back to top