CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CALS8 (ATP synthase gamma chain OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 38/103 (36.89%), Postives = 58/103 (56.31%), Query Frame = -1 
Query:  234 KMIVARDSVTFNKGELSP--LMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 536
            K ++  D   F  GE      + +E  P  +LD ++  Y+   I  A  +S+ SE+AARM+ M   T +ADE+ + L +  N+ERQ  IT E+ EI++GA AL
Sbjct:  189 KKLLPLDPSEFVSGEFKKDETIRYEPSPTNVLDVVIYEYLKGIIFGAMMDSYVSELAARMTAMDNATKSADEMIQKLVLKLNRERQAVITQEISEIISGAAAL 291
[Close]
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BUCMH (ATP synthase gamma chain OS=Buchnera aphidicola subsp. Melaphis rhois GN=atpG PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.604e-11
Identity = 34/82 (41.46%), Postives = 52/82 (63.41%), Query Frame = -1 
Query:  231 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALT 476
            ++E D   +L+ ++  Y+  QI +A  E++ SE AARM  M   TDN+ +L + L + YN+ RQ  IT EL EIV+GA A++
Sbjct:  206 IYESDSKLLLNKLLNNYLEFQIYQASLENYTSEQAARMIAMKQATDNSKDLIRELQIIYNKARQDNITQELTEIVSGAAAIS 287
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_CALS89.604e-1136.89ATP synthase gamma chain OS=Caldicellulosiruptor s... [more]
ATPG_BUCMH9.604e-1141.46ATP synthase gamma chain OS=Buchnera aphidicola su... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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