CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLTE (ATP synthase gamma chain OS=Chlorobium tepidum GN=atpG PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.209e-15
Identity = 42/83 (50.60%), Postives = 59/83 (71.08%), Query Frame = -1
Query:  228 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 476
            L+E  PA I+D ++P ++N+Q+ R   ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIVAGA+AL Q
Sbjct:  210 LYEPSPAAIIDELVPKHLNTQLWRVMLESNAAEQAARMAAMDSATENAKELIRVLNISYNRARQAAITKELSEIVAGADALKQ 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_AMOA5 (ATP synthase gamma chain OS=Amoebophilus asiaticus (strain 5a2) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.885e-15
Identity = 40/83 (48.19%), Postives = 58/83 (69.88%), Query Frame = -1
Query:  228 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 476
            ++E   A +++ ++P+ +  Q+ +A  ES ASE  ARM+ MS  TDNA+EL K+L + YN+ RQ  IT E+LEI AGAEAL+Q
Sbjct:  208 IYEPSKASLVETLIPMTLKIQLYKALLESAASEHGARMTTMSKATDNAEELLKSLRITYNKTRQAAITNEILEIAAGAEALSQ 290          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_KINRD (ATP synthase gamma chain OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15
Identity = 44/88 (50.00%), Postives = 55/88 (62.50%), Query Frame = -1
Query:  234 GELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 497
            GEL PL  FE     +LDA++P Y+NS+I     ++ ASE+AAR   M   TDNADEL K L+   N  RQ  IT E+ EIV GA+AL
Sbjct:  208 GELQPLYEFEPSADAVLDALLPQYVNSRIYNCLLQAAASELAARQRAMKSATDNADELIKKLTRLANNARQADITQEISEIVGGADAL 295          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLCH (ATP synthase gamma chain OS=Chlorobium chlorochromatii (strain CaD3) GN=atpG PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.768e-15
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E +PA I+D ++P ++ +Q+ R   ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIVAGAEAL
Sbjct:  211 MYEPNPAAIIDVLLPKHLRTQVWRIMLESNAAEQAARMAAMDSATENAKELLRTLNISYNRARQAAITTELSEIVAGAEAL 291          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLP8 (ATP synthase gamma chain OS=Chlorobaculum parvum (strain NCIB 8327) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.427e-15
Identity = 41/83 (49.40%), Postives = 58/83 (69.88%), Query Frame = -1
Query:  228 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 476
            L+E  P  I+D ++P ++N+Q+ R   ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIVAGA+AL Q
Sbjct:  210 LYEPSPEAIIDELVPKHLNTQVWRVMLESNAAEQAARMAAMDSATENAKELIRVLNISYNRARQAAITKELSEIVAGADALKQ 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLT3 (ATP synthase gamma chain OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 41/93 (44.09%), Postives = 63/93 (67.74%), Query Frame = -1
Query:  228 KGELSPLM--LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEALTQ 500
            + +L P++  ++E  P  I++ ++P ++N+Q+ R   ES A+E A+RM+ M   TDNA EL ++LS+ YN+ RQ  IT E+LEIV GA AL Q
Sbjct:  210 QNKLVPIVDYIYEPSPEAIINELVPKHLNTQLWRVLLESNAAEQASRMTAMDSATDNAKELLRSLSITYNRARQAAITKEILEIVGGANALEQ 302          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLPD (ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain DSM 266) GN=atpG PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.394e-15
Identity = 39/81 (48.15%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E  P  I+D ++P ++N+Q+ R   ES A+E AARMS M   T+NA EL + L+++YN+ RQ  IT EL EIV GA+AL
Sbjct:  209 IYEPSPESIIDVLVPKHLNTQVWRVMLESNAAEQAARMSAMDSATENAKELLRTLNISYNRARQAAITKELSEIVGGADAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_HELMI (ATP synthase gamma chain OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 45/108 (41.67%), Postives = 64/108 (59.26%), Query Frame = -1
Query:  234 RLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 557
            +L P   +   + +S   +KG   PL  FE  P  +LD ++P Y+ +QI RA  ES ASE  ARM+ M   TDNA E+   L++++N+ RQ  IT E+ E+V GA AL
Sbjct:  183 QLLPIPAQAGESANSAKDSKGP-QPLYAFEPSPEAVLDELLPKYVENQIYRALLESKASEQGARMTAMGSATDNAKEMINKLTLSFNRARQAAITKEISEVVGGAAAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLPB (ATP synthase gamma chain OS=Chlorobium phaeobacteroides (strain BS1) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = -1
Query:  234 LFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 476
            ++E  P+ I+D ++P ++N+QI R   ES A+E A+RM+ M   T+NA EL + L ++YN+ RQ  IT EL EIVAGAEAL
Sbjct:  212 IYEPSPSAIIDVLVPKHLNTQIWRMMLESNAAEHASRMTAMDSATENAKELMRVLKISYNRARQAAITTELSEIVAGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_CHLL2 (ATP synthase gamma chain OS=Chlorobium limicola (strain DSM 245 / NBRC 103803) GN=atpG PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.432e-14
Identity = 43/99 (43.43%), Postives = 65/99 (65.66%), Query Frame = -1
Query:  234 IVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 530
            I A ++   N G+     ++E  PA I+D ++P ++++Q+ R   ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIVAGA+AL
Sbjct:  195 IAAENAGKDNSGDY----IYEPSPAVIIDELVPKHLSTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVAGADAL 289          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_CHLTE2.209e-1550.60ATP synthase gamma chain OS=Chlorobium tepidum GN=... [more]
ATPG_AMOA52.885e-1548.19ATP synthase gamma chain OS=Amoebophilus asiaticus... [more]
ATPG_KINRD3.768e-1550.00ATP synthase gamma chain OS=Kineococcus radiotoler... [more]
ATPG_CHLCH3.768e-1549.38ATP synthase gamma chain OS=Chlorobium chlorochrom... [more]
ATPG_CHLP86.427e-1549.40ATP synthase gamma chain OS=Chlorobaculum parvum (... [more]
ATPG_CHLT38.394e-1544.09ATP synthase gamma chain OS=Chloroherpeton thalass... [more]
ATPG_CHLPD8.394e-1548.15ATP synthase gamma chain OS=Chlorobium phaeobacter... [more]
ATPG_HELMI1.432e-1441.67ATP synthase gamma chain OS=Heliobacterium modesti... [more]
ATPG_CHLPB1.432e-1449.38ATP synthase gamma chain OS=Chlorobium phaeobacter... [more]
ATPG_CHLL21.432e-1443.43ATP synthase gamma chain OS=Chlorobium limicola (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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