CF831926

Overview
NameCF831926
Unique NameCF831926
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length569
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig998 contig Csv1_Contig998:3..571. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHIE6 (ATP synthase gamma chain OS=Rhizobium etli (strain CIAT 652) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.442e-14
Identity = 39/80 (48.75%), Postives = 57/80 (71.25%), Query Frame = -1
Query:  234 FEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 473
            +E DPA ILD ++P  ++ QI RA  E+ A E+ A+MS M   T NA E+   L+++YN++RQ +IT EL+EI++GAEAL
Sbjct:  215 YEPDPAAILDDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_PROVI (ATP synthase gamma chain OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 2.442e-14
Identity = 39/90 (43.33%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  234 NKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 503
            N+G+     ++E  P+ I+  ++P ++N+Q+ R   ES A+E AARM+ M   T+NA EL + L+++YN+ RQ  IT EL EIV GA+AL
Sbjct:  200 NEGDRGGDYIYEPSPSAIISELVPKHLNTQVWRMMLESNAAEQAARMTAMDSATENAKELLRTLNISYNRARQAAITKELSEIVGGADAL 289          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_RHIL3 (ATP synthase gamma chain OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=atpG PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.190e-14
Identity = 43/108 (39.81%), Postives = 66/108 (61.11%), Query Frame = -1
Query:  234 RLTPNEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 557
            RL P   + + A D+          +  +E DPA IL+ ++P  ++ QI RA  E+ A E+ A+MS M   T NA E+   L+++YN++RQ +IT EL+EI++GAEAL
Sbjct:  192 RLIPASAEAVQAEDAE-----HAGAVYEYEPDPASILEDLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGEMINKLTLSYNRQRQAQITKELIEIISGAEAL 294          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_FUSNN (ATP synthase gamma chain OS=Fusobacterium nucleatum subsp. nucleatum GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = -1
Query:  234 VTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 512
            +T  + EL+   +FE     IL A++P ++N QI +A   + ASE +AR + MS  TDNADE+ K L++ YN+ RQ  IT E+ EIV GA AL
Sbjct:  190 ITRPEVELNSEYIFEPSTEYILSALLPRFINLQIYQAILNNTASEHSARKNSMSSATDNADEMIKTLNIKYNRNRQSAITQEITEIVGGASAL 282          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSU (ATP synthase gamma chain OS=Brucella suis GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUSI (ATP synthase gamma chain OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUO2 (ATP synthase gamma chain OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUME (ATP synthase gamma chain OS=Brucella melitensis GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUMB (ATP synthase gamma chain OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
BLAST of CF831926 vs. ExPASy Swiss-Prot
Match: ATPG_BRUC2 (ATP synthase gamma chain OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpG PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 4.166e-14
Identity = 43/104 (41.35%), Postives = 63/104 (60.58%), Query Frame = -1
Query:  234 NEGKMIVARDSVTFNKGELSPLMLFEQDPAQILDAMMPLYMNSQILRAFQESFASEVAARMSPMSIVTDNADELKKNLSVAYNQERQGKITGELLEIVAGAEAL 545
            NE +M  A D++            +E DPA IL  ++P  ++ QI RA  E+ A E+ A+MS M   T NA ++   LS+ YN++RQ +IT EL+EI++GAEAL
Sbjct:  199 NEAEMETAGDAI----------YEYEPDPAAILSTLIPRNISVQIFRALLENVAGEMGAKMSAMDNATRNAGDMINKLSITYNRQRQAQITKELIEIISGAEAL 292          
The following BLAST results are available for this feature:
BLAST of CF831926 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 412
Match NameE-valueIdentityDescription
ATPG_RHIE62.442e-1448.75ATP synthase gamma chain OS=Rhizobium etli (strain... [more]
ATPG_PROVI2.442e-1443.33ATP synthase gamma chain OS=Prosthecochloris vibri... [more]
ATPG_RHIL33.190e-1439.81ATP synthase gamma chain OS=Rhizobium leguminosaru... [more]
ATPG_FUSNN4.166e-1445.16ATP synthase gamma chain OS=Fusobacterium nucleatu... [more]
ATPG_BRUSU4.166e-1441.35ATP synthase gamma chain OS=Brucella suis GN=atpG ... [more]
ATPG_BRUSI4.166e-1441.35ATP synthase gamma chain OS=Brucella suis (strain ... [more]
ATPG_BRUO24.166e-1441.35ATP synthase gamma chain OS=Brucella ovis (strain ... [more]
ATPG_BRUME4.166e-1441.35ATP synthase gamma chain OS=Brucella melitensis GN... [more]
ATPG_BRUMB4.166e-1441.35ATP synthase gamma chain OS=Brucella melitensis bi... [more]
ATPG_BRUC24.166e-1441.35ATP synthase gamma chain OS=Brucella canis (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831926 ID=CF831926; Name=CF831926; organism=Citrus sinensis; type=EST; length=569bp
TTTTTTTTTTTTTTTGCCAGAAAAAACAATGCCATTTCTTTTCGTCCCTT
ATACTAGTTTACCATATGAAATACTCAAGTCATCAATACAAATTATAAAC
CAGCGTTCAATGATGAATATACTAACTAGCATATGATGTGAACTGCGATA
TTCTCAACCCCCCCAAACAAAAAAAAGGGATATACAAAAATCAAGTCAAG
GAAAAACAAAGGGTCAAATTAATCAAACTGTGTAAGTGCCTCGGCTCCAG
CAACAATCTCCAATAGTTCACCAGTGATTTTACCCTGGCGTTCTTGGTTA
TAAGCAACTGAAAGATTTTTCTTCAACTCATCAGCATTATCCGTAACAAT
ACTCATGGGACTCATCCTCGCTGCAACCTCACTAGCGAATGACTCCTGGA
ATGCCCTCAAAATCTGACTATTCATATAGAGCGGCATCATCGCATCAAGA
ATCTGAGCCGGATCTTGCTCAAACAGCATAAGAGGCGATAATTCCCCTTT
ATTGAATGTCACGCTATCTCTCGCGACAATCATCTTCCCTTCATTAGGTG
TCAACCTAAACAACTCATC
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