CF831927

Overview
NameCF831927
Unique NameCF831927
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length502
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNJB (ATP synthase gamma chain OS=Synechococcus sp. GN=atpG PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 1.258e-12
Identity = 25/41 (60.98%), Postives = 36/41 (87.80%), Query Frame = 3
Query:   96 LFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            +F+Q P QILDA++PLY+N Q+LRAL+E+ A+E A+RM+AM
Sbjct:  234 IFEQDPVQILDALLPLYLNNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 38.5058 bits (88), Expect = 1.258e-12
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA*AL 340
            + L LAYN+ RQA IT E+LE+VAGA AL
Sbjct:  286 RTLGLAYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_CYAP8 (ATP synthase gamma chain OS=Cyanothece sp. (strain PCC 8801) GN=atpG PE=3 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 1.634e-12
Identity = 30/65 (46.15%), Postives = 43/65 (66.15%), Query Frame = 3
Query:   24 TIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            T +GK+ VER              +F+Q P QILDA++PLY+N Q+LR L+E+ A+E A+RM+AM
Sbjct:  210 TRDGKLRVERETIAQEVSSFPQDMIFEQDPIQILDALLPLYINNQLLRGLQEAAASELAARMTAM 274          

HSP 2 Score: 35.8094 bits (81), Expect = 1.634e-12
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L+YN+ RQA IT +L+E+VAGA AL
Sbjct:  288 LTLSYNKARQAAITQQLMEVVAGANAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_THEEB (ATP synthase gamma chain OS=Thermosynechococcus elongatus (strain BP-1) GN=atpG PE=1 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 1.634e-12
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT    + V R   T     L    +F+Q P QILDA++PLY+N Q+LRAL+E+ A+E A+RM+AM
Sbjct:  209 TTRGSHLEVNREKVTSTLPALPSDMIFEQDPLQILDALLPLYLNNQLLRALQEAAASELAARMTAM 274          

HSP 2 Score: 36.965 bits (84), Expect = 1.634e-12
Identity = 18/27 (66.67%), Postives = 23/27 (85.19%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA*AL 340
            L+L+YN+ RQA IT E+LE+VAGA AL
Sbjct:  288 LTLSYNKARQAAITQEILEVVAGAEAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_VIGUN (ATP synthase subunit gamma, chloroplastic (Fragment) OS=Vigna unguiculata PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT EGK+ VER        + SP+  F+Q P QILDA++PLY+N QILRAL+ES A+E A+RMSAM
Sbjct:   48 TTKEGKLTVERDVVRTKTTDYSPILQFEQDPVQILDALLPLYLNSQILRALQESLASELAARMSAM 113          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_PROM5 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain MIT 9515) GN=atpG PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 2.755e-12
Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKL-FDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT   K++VE+ N   N+ +  P  + F+Q P Q+LD+++PLY+  QILRAL+ES A+E A RM+AM
Sbjct:  211 TTKNSKLLVEKSNLEKNESDRLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAM 277          

HSP 2 Score: 32.3426 bits (72), Expect = 2.755e-12
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA 331
            L+L YN+ RQA IT E+LE+V G+
Sbjct:  291 LNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_PROMT (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL2A) GN=atpG PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.755e-12
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKL-FDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT + ++I+E+     N+    P  + F+Q P Q+L+A++PLY+  Q+LRAL+ES A+E ASRM+AM
Sbjct:  211 TTKDSQLIIEKDAAPSNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAM 277          

HSP 2 Score: 36.1946 bits (82), Expect = 2.755e-12
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA 331
            KNL++ YN+ RQA IT E+LE+V GA
Sbjct:  289 KNLTIDYNKARQAAITQEILEVVGGA 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_PROM1 (ATP synthase gamma chain OS=Prochlorococcus marinus (strain NATL1A) GN=atpG PE=3 SV=1)

HSP 1 Score: 56.6102 bits (135), Expect = 2.755e-12
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKL-FDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT + ++I+E+     N+    P  + F+Q P Q+L+A++PLY+  Q+LRAL+ES A+E ASRM+AM
Sbjct:  211 TTKDSQLIIEKDAAPTNEEPKLPSDIVFEQSPDQLLNALLPLYLQNQLLRALQESAASELASRMTAM 277          

HSP 2 Score: 36.1946 bits (82), Expect = 2.755e-12
Identity = 16/26 (61.54%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA 331
            KNL++ YN+ RQA IT E+LE+V GA
Sbjct:  289 KNLTIDYNKARQAAITQEILEVVGGA 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_PROMP (ATP synthase gamma chain OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=atpG PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 4.646e-12
Identity = 32/67 (47.76%), Postives = 46/67 (68.66%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKL-FDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT   K++VE+ N   N  +  P  + F+Q P Q+LD+++PLY+  QILRAL+ES A+E A RM+AM
Sbjct:  211 TTKNSKLLVEKSNIEKNDSDKLPSDIVFEQSPDQLLDSLLPLYLQNQILRALQESAASELACRMTAM 277          

HSP 2 Score: 32.3426 bits (72), Expect = 4.646e-12
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA 331
            L+L YN+ RQA IT E+LE+V G+
Sbjct:  291 LNLTYNKARQAAITQEILEVVGGS 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_SYNP2 (ATP synthase gamma chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=atpG PE=3 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 4.647e-12
Identity = 29/62 (46.77%), Postives = 41/62 (66.13%), Query Frame = 3
Query:   33 GKMIVERPNETFNKGELSPLKLFDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            GK  VER        EL    +F+Q P  IL+A++PLY++ Q+LRAL+E  A+E A+RM+AM
Sbjct:  213 GKFQVEREKVATEVKELPADMIFEQDPKDILNALLPLYLSNQLLRALQEGAASELAARMTAM 274          

HSP 2 Score: 37.3502 bits (85), Expect = 4.647e-12
Identity = 19/29 (65.52%), Postives = 23/29 (79.31%), Query Frame = 2
Query:  254 KNLSLAYNQERQAKITGELLEIVAGA*AL 340
            K L+L+YN+ RQA IT EL E+VAGA AL
Sbjct:  286 KTLTLSYNKARQAAITQELSEVVAGANAL 314          
BLAST of CF831927 vs. ExPASy Swiss-Prot
Match: ATPG_PROMS (ATP synthase gamma chain OS=Prochlorococcus marinus (strain AS9601) GN=atpG PE=3 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 6.032e-12
Identity = 31/67 (46.27%), Postives = 47/67 (70.15%), Query Frame = 3
Query:   21 TTIEGKMIVERPNETFNKGELSPLKL-FDQYPAQILDAMMPLYMNRQILRALRESFATEDASRMSAM 218
            TT + K++VE+ N   +  E  P  + F+Q P Q+LD+++PLY+  Q+LRAL+ES A+E A RM+AM
Sbjct:  211 TTKDSKLLVEKSNIEKSDSEKLPSDIVFEQSPDQLLDSLLPLYLQNQVLRALQESAASELACRMTAM 277          

HSP 2 Score: 32.3426 bits (72), Expect = 6.032e-12
Identity = 14/24 (58.33%), Postives = 19/24 (79.17%), Query Frame = 2
Query:  260 LSLAYNQERQAKITGELLEIVAGA 331
            L+L YN+ RQA IT E+LE+V G+
Sbjct:  291 LNLTYNKARQAAITQEILEVVGGS 314          
The following BLAST results are available for this feature:
BLAST of CF831927 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
ATPG_SYNJB1.258e-1260.98ATP synthase gamma chain OS=Synechococcus sp. GN=a... [more]
ATPG_CYAP81.634e-1246.15ATP synthase gamma chain OS=Cyanothece sp. (strain... [more]
ATPG_THEEB1.634e-1246.97ATP synthase gamma chain OS=Thermosynechococcus el... [more]
ATPG_VIGUN1.692e-1257.58ATP synthase subunit gamma, chloroplastic (Fragmen... [more]
ATPG_PROM52.755e-1247.76ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMT2.755e-1244.78ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROM12.755e-1244.78ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_PROMP4.646e-1247.76ATP synthase gamma chain OS=Prochlorococcus marinu... [more]
ATPG_SYNP24.647e-1246.77ATP synthase gamma chain OS=Synechococcus sp. (str... [more]
ATPG_PROMS6.032e-1246.27ATP synthase gamma chain OS=Prochlorococcus marinu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831927 ID=CF831927; Name=CF831927; organism=Citrus sinensis; type=EST; length=502bp
GGATGAGTTGCCCTATAAAGACAACTATTGAAGGGAAGATGATTGTCGAG
AGACCTAACGAGACCTTCAATAAAGGGGAATTATCGCCTCTTAAGCTGTT
TGACCAATATCCGGCTCAGATTCTTGATGCAATGATGCCACTCTATATGA
ATAGACAGATTTTGAGGGCATTGCGAGAGTCATTCGCTACTGAGGATGCA
TCGAGGATGAGTGCCATGATGTACTGCTACTGATAATGCTGATGAGTTGA
AATAAAAATCTTTCTCTTGCTTATAACCAAGAACGCCAGGCTAAAATCAC
TGGTGAACTATTGGAGATTGTTGCTGGAGCCTAGGCACTTACACAGGTTG
ATTAATTTGACCCTTTGTTTTTCCTTGACTTGATTTTTCTATATCCCTTT
TTTTTGTTTGGGGGGGTTGATAATATTGCAGTTCACATCATATGCTAGTT
AGTATATTCATCATTGAACGCTGGCTTATAATTGGTATTGATGACTTGAG
TA
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