CF831928 | Citrus Genome Database

Overview


Name	CF831928
Unique Name	CF831928
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	852

Libraries


Library Name	Type
Ruby Orange Ovary at Anthesis cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6872	contig	Csv1_Contig6872:177..1028.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_NUPAD (50S ribosomal protein L2, chloroplastic OS=Nuphar advena GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.023e-11
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 39.2762 bits (90), Expect = 1.023e-11
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D  IL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDIFIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_DIOEL (50S ribosomal protein L2, chloroplastic OS=Dioscorea elephantipes GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 1.723e-11
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  211 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 250

HSP 2 Score: 38.5058 bits (88), Expect = 1.723e-11
Identity = 17/28 (60.71%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+ KY+D+ IL
Sbjct:  243 KKPTTPWGYPALGRRSRKRKKYSDSFIL 270

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_CALFG (50S ribosomal protein L2, chloroplastic OS=Calycanthus floridus var. glaucus GN=rpl2 PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 2.906e-11
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 40.817 bits (94), Expect = 2.906e-11
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDSFIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_JASNU (50S ribosomal protein L2, chloroplastic OS=Jasminum nudiflorum GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.521 bits (114), Expect = 3.771e-11
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 40.4318 bits (93), Expect = 3.771e-11
Identity = 18/28 (64.29%), Postives = 22/28 (78.57%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL  RSRK+NKY++NLIL
Sbjct:  242 KKPTTPWGYPALGSRSRKRNKYSENLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_DRIGR (50S ribosomal protein L2, chloroplastic OS=Drimys granadensis GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.0618 bits (118), Expect = 3.772e-11
Identity = 23/40 (57.50%), Postives = 27/40 (67.50%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGV MN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVAMNPVDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 38.891 bits (89), Expect = 3.772e-11
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK+NKY+D  IL
Sbjct:  242 KKPTTPWGYPALGRRSRKRNKYSDIYIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_AETGR (50S ribosomal protein L2, chloroplastic OS=Aethionema grandiflora GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.895e-11
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 36.965 bits (84), Expect = 4.895e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY++ LIL
Sbjct:  242 KKPATPWGYPALGRRTRKRKKYSETLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_AETCO (50S ribosomal protein L2, chloroplastic OS=Aethionema cordifolium GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 4.895e-11
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+GR  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWG 249

HSP 2 Score: 36.965 bits (84), Expect = 4.895e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY++ LIL
Sbjct:  242 KKPATPWGYPALGRRTRKRKKYSETLIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_EPIVI (50S ribosomal protein L2, plastid OS=Epifagus virginiana GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 4.895e-11
Identity = 23/36 (63.89%), Postives = 26/36 (72.22%), Query Frame = -2

Query:  126 KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 233
            K P VRGVVMN ID+ H GG+GR  I RKK +TP G
Sbjct:  214 KRPVVRGVVMNPIDHPHGGGEGRAPIGRKKPTTPWG 249

HSP 2 Score: 39.6614 bits (91), Expect = 4.895e-11
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RRSRK NKY+DN I+
Sbjct:  242 KKPTTPWGYPALGRRSRKINKYSDNFIV 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_WHEAT (50S ribosomal protein L2, chloroplastic OS=Triticum aestivum GN=rpl2-A PE=3 SV=2)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  210 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 249

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  242 KKPTTPWGYPALGRRTRKRKKYSDSFIL 269

[Close]

BLAST of CF831928 vs. ExPASy Swiss-Prot
Match: RK2_SORBI (50S ribosomal protein L2, chloroplastic OS=Sorghum bicolor GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 50.447 bits (119), Expect = 8.251e-11
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = -2

Query:  126 CWF-KNPAVRGVVMNSIDYLHWGGKGRVSICRKKASTPLG 242
            CW  K P VRGVVMN +D+ H GG+G+  I RKK +TP G
Sbjct:  208 CWLGKRPVVRGVVMNPVDHPHGGGEGKAPIGRKKPTTPWG 247

HSP 2 Score: 37.3502 bits (85), Expect = 8.251e-11
Identity = 16/28 (57.14%), Postives = 21/28 (75.00%), Query Frame = -3

Query:   65 KRPQPLWGYLAL*RRSRKKNKYNDNLIL 148
            K+P   WGY AL RR+RK+ KY+D+ IL
Sbjct:  240 KKPTTPWGYPALGRRTRKRKKYSDSFIL 267

The following BLAST results are available for this feature:

BLAST of CF831928 vs. ExPASy Swiss-Prot

BLAST of CF831928 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70


Match Name	E-value	Identity	Description
RK2_NUPAD	1.023e-11	60.00	50S ribosomal protein L2, chloroplastic OS=Nuphar ...	[more]
RK2_DIOEL	1.723e-11	60.00	50S ribosomal protein L2, chloroplastic OS=Dioscor...	[more]
RK2_CALFG	2.906e-11	61.11	50S ribosomal protein L2, chloroplastic OS=Calycan...	[more]
RK2_JASNU	3.771e-11	61.11	50S ribosomal protein L2, chloroplastic OS=Jasminu...	[more]
RK2_DRIGR	3.772e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Drimys ...	[more]
RK2_AETGR	4.895e-11	60.00	50S ribosomal protein L2, chloroplastic OS=Aethion...	[more]
RK2_AETCO	4.895e-11	60.00	50S ribosomal protein L2, chloroplastic OS=Aethion...	[more]
RK2_EPIVI	4.895e-11	63.89	50S ribosomal protein L2, plastid OS=Epifagus virg...	[more]
RK2_WHEAT	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Triticu...	[more]
RK2_SORBI	8.251e-11	57.50	50S ribosomal protein L2, chloroplastic OS=Sorghum...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS02_01A11_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CF831928 ID=CF831928; Name=CF831928; organism=Citrus sinensis; type=EST; length=852bp
GCCCCTTTAGACTATGTCATGTGCATTAAAATTTCGATTTTCTCTCCTAT
TTAATACCGTTGAAAAGAATTAAATTATCATTATATTTATTCTTTTTCCT
GCTTCGTCTTCAAAGTGCAAGATAACCCCAAAGGGGTTGAGGCCTTTTTT
CTACAAATCGATACCCTTCCTTTACCACCCCAATGGAGGTAGTCTATGGA
ATTCATAACTACTCCTCTTACAGCAGGATTCTTGAACCAACAATCAGTTC
AAGAAATTAAAAAAAAGGCAGACCTGAAATAAGAATAGAACTCTCAAGTT
TTGCTTCAAAATATAAATAAGTGAAAACCATAGATTTCAGATTTATTAAT
GAAAGCTATGAGAAAGTTTGGTTTTACACCAGTGCATTATTTAGAGGGTT
CAATGAATGATGATACCCCTCTGTTAATATTGTTGTTACTCTGCAGCTGG
TTTGCTAGTCTCATCCTTGCATCTAGGTTGATGATTGTGATTTTTCAACT
CATCTCCAGCCACAAGAAAGAATGCAGTGTGTCTGAAAAAATTCATCATT
TTGATTTTTGAGTCAGCATCAATTTCTGGGGTACTGTCTAGTGCAATCTG
CATATGATGTAACCATCTCTCTGCAGCTTGATGTGTTACTGGGAATGGTC
GATGACGTCCAATTAATGCAGGATGGCCTTTCCTCTGAGAATACAGAGGA
GGCCCTCCCATTCTCTGCACAAAAAACTCATATTGGTTCTGAATTGCTTC
TTCTTTATTCGAATTTGCAAAAATTGACCTAAACCACTCTTCCTCGTCGT
CATAAACCCTGGTATAGAAGTTGGTGGAGAGATTGATGAAAGTTTGAAGG
CC