CF831929

Overview
NameCF831929
Unique NameCF831929
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2291 contig Csv1_Contig2291:94..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP32_ORYSJ (Expansin-A32 OS=Oryza sativa subsp. japonica GN=EXPA32 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.198e-37
Identity = 69/120 (57.50%), Postives = 93/120 (77.50%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSK-TGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD++ PAFLQIAQ +AGIVPIS+RRVPC K GGIR+T+ G+ YFNLV+++NVGGAGDV  +S+KG+K   W  + RNWGQ WQ++  L G+SL+F++   D R  TS +V+P +W
Sbjct:  137 PPREHFDLSMPAFLQIAQEKAGIVPISYRRVPCVKVGGIRYTITGNPYFNLVMVSNVGGAGDVAGLSVKGNKRVKWTPLKRNWGQEWQTSEVLTGESLTFRVMTGDHRKATSWHVLPPDW 256          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP22_ORYSJ (Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.198e-37
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGS-KTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDMA+PA+ +I  YRAGI+P+ ++RVPC KKGG+RFT+NGH YFNLVL+TNV   G + S+ + GS  T W  M RNWG NW S SYL GQ LSF++T  DG+T+   N+VP  W
Sbjct:  148 PPRPHFDMAQPAWEKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNSTDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGW 267          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXPA9_ORYSJ (Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXPA9 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 5.455e-37
Identity = 67/119 (56.30%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFDM++PA+  IA Y +GIVP+ + R PC + GGIRF + GH Y+ LVL+TNV G+G V +  +KGS T W +MSRNWG+NWQSN+YL GQ+LSF++ A DG  VT+ +V P NW
Sbjct:  122 PPRRHFDMSQPAWEAIAVYSSGIVPVRYARTPCRRVGGIRFGIAGHDYYELVLVTNVAGSGAVAAAWVKGSGTEWLSMSRNWGENWQSNAYLTGQALSFRVQADDGGVVTAYDVAPANW 240          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP13_ORYSJ (Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2)

HSP 1 Score: 153.295 bits (386), Expect = 9.305e-37
Identity = 67/120 (55.83%), Postives = 89/120 (74.17%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKT-GWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDMA+PA+ +I  YR GI+P+ ++RVPC KKGG+RFT+NGH YF LVL+TNVG AG + ++ +KGSK+  W AM+ NWG  W S +YL GQ LSF++T +DG+T+   NVV   W
Sbjct:  130 PPRPHFDMAQPAWEKIGIYRGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAMAHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGW 249          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP28_ORYSJ (Expansin-A28 OS=Oryza sativa subsp. japonica GN=EXPA28 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.587e-36
Identity = 68/119 (57.14%), Postives = 94/119 (78.99%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDM++PA+  I  YRAGIVP+ +++V C ++GG+RFTV+G +YF LVLITNV G+G V ++S+KGSKTGW  ++RNWG NWQ NS L GQ+LSF++T++ G+T+  N+VVP  W
Sbjct:  123 PPRPHFDMSQPAWETIGIYRAGIVPVLYQQVKCWRQGGVRFTVSGFNYFELVLITNVAGSGSVQAMSVKGSKTGWIPLARNWGANWQCNSALVGQALSFRVTSTGGQTLQINSVVPEWW 241          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP25_ARATH (Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD++ P FL+IAQY+AG+VP+ +RR+ CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF++T SDG T   NNV+P NW
Sbjct:  146 PPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 264          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP23_ARATH (Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=2 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 2.073e-36
Identity = 63/119 (52.94%), Postives = 87/119 (73.11%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD++ P FL+IAQY+AG+VP+ +RR+ CA+ GG++F   G+ YF ++L  NVGGAGD+  + +KG KTGW  M +NWGQNW +   L GQ +SF++T SDG T   NNV+P NW
Sbjct:  139 PPQKHFDLSLPMFLKIAQYKAGVVPVKYRRISCARTGGVKFETKGNPYFLMILPYNVGGAGDIKLMQVKGDKTGWITMQKNWGQNWTTGVNLTGQGISFRVTTSDGVTKDFNNVMPNNW 257          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP22_ARATH (Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.536e-36
Identity = 65/119 (54.62%), Postives = 89/119 (74.79%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP +HFD++   FL+IA+Y+AG+VP+ +RR+PC+K GG++F   G+ YF +VLI NVGGAGD+  V +KG+KTGW  M +NWGQNW + + L GQ LSF++T SDG T    NV+P NW
Sbjct:  143 PPQKHFDLSLAMFLKIAKYKAGVVPVRYRRIPCSKTGGVKFETKGNPYFLMVLIYNVGGAGDIKYVQVKGNKTGWITMKKNWGQNWTTITVLTGQGLSFRVTTSDGITKDFWNVMPKNW 261          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP25_ORYSJ (Expansin-A25 OS=Oryza sativa subsp. japonica GN=EXPA25 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.618e-36
Identity = 67/119 (56.30%), Postives = 91/119 (76.47%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTGWQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDMAEPA+LQI  Y+AGI+P+ +++V C ++GGIRFT+ G ++F LVL++NV G+G V SVS+KG  TGW  ++RNWG NWQ NS L GQ+LSF +T++ G+T+   NVVP  W
Sbjct:  123 PPRPHFDMAEPAWLQIGIYKAGIIPVLYQQVKCWRQGGIRFTMGGFNFFELVLVSNVAGSGSVRSVSVKGGSTGWITLNRNWGANWQCNSGLVGQALSFAVTSTGGQTLYIYNVVPSWW 241          
BLAST of CF831929 vs. ExPASy Swiss-Prot
Match: EXP23_ORYSJ (Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 4.618e-36
Identity = 66/120 (55.00%), Postives = 86/120 (71.67%), Query Frame = -3
Query:  267 PPLQHFDMAEPAFLQIAQYRAGIVPISFRRVPCAKKGGIRFTVNGHSYFNLVLITNVGGAGDVHSVSIKGSKTG-WQAMSRNWGQNWQSNSYLNGQSLSFQLTASDGRTVTSNNVVPGNW 623
            PP  HFDMA+PA+ +I  Y AGI+P+ ++RVPC KKGG+RFT+NGH YF LVL+TNV  AG + S+ + GS T  W  M+RNWG  W S +YL GQ LSF++T +D +T+   NVVP  W
Sbjct:  135 PPRPHFDMAQPAWEKIGVYSAGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMARNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGW 254          
The following BLAST results are available for this feature:
BLAST of CF831929 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
EXP32_ORYSJ3.198e-3757.50Expansin-A32 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP22_ORYSJ3.198e-3757.50Expansin-A22 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXPA9_ORYSJ5.455e-3756.30Expansin-A9 OS=Oryza sativa subsp. japonica GN=EXP... [more]
EXP13_ORYSJ9.305e-3755.83Expansin-A13 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP28_ORYSJ1.587e-3657.14Expansin-A28 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP25_ARATH2.073e-3652.94Expansin-A25 OS=Arabidopsis thaliana GN=EXPA25 PE=... [more]
EXP23_ARATH2.073e-3652.94Expansin-A23 OS=Arabidopsis thaliana GN=EXPA23 PE=... [more]
EXP22_ARATH3.536e-3654.62Expansin-A22 OS=Arabidopsis thaliana GN=EXPA22 PE=... [more]
EXP25_ORYSJ4.618e-3656.30Expansin-A25 OS=Oryza sativa subsp. japonica GN=EX... [more]
EXP23_ORYSJ4.618e-3655.00Expansin-A23 OS=Oryza sativa subsp. japonica GN=EX... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01A11_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF831929 ID=CF831929; Name=CF831929; organism=Citrus sinensis; type=EST; length=625bp
TTTTTTTTGAACGATTTATACCCGTTCATTCAATTGAAGTAATAACTATA
TATCGTACACAATCATTTCTATTTATAGAGGCCTAGCGGGTGCCAACAGA
CCACCACAGCAACAAGACAGGCCACATCGGCCAGGCCTGAGCCTCACCTA
CCCCTATTCTCACCCTTCCTCCCTCACAAACAGTGCCAAATTCAATTAAA
TATACAAATTCTGATTCACTTTTTTAAAATCTAAAACTGACCACCCTCAA
AGGTTTGCCCAAATTGCCAATTTCCAGGCACAACATTGTTGCTAGTCACA
GTCCTGCCGTCACTGGCTGTCAATTGGAAAGAAAGACTTTGGCCGTTAAG
ATAAGAATTGCTCTGCCAATTTTGGCCCCAGTTCCTTGACATTGCTTGCC
ATCCAGTCTTTGAACCCTTGATTGATACTGAATGTACATCTCCTGCTCCT
CCGACATTTGTGATCAAAACCAGGTTGAAGTATGAGTGTCCATTGACGGT
AAACCTTATTCCTCCTTTCTTCGCACACGGGACCCTTCTGAAGGAAATTG
GGACGATACCGGCGCGGTATTGGGCAATTTGCAAGAAAGCGGGCTCAGCC
ATGTCAAAGTGCTGGAGGGGAGGAT
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