CF832024

Overview
NameCF832024
Unique NameCF832024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:731..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METJA (Elongation factor 2 OS=Methanocaldococcus jannaschii GN=fusA PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.098e-20
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = -1
Query:  384 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLK 845
            LA E  +G+  ++ D VLH DAIHRG  Q+IP AR  I  + + A P LLEP+  V I  P+  +G     ++ +RG +  +M++ G  +  IKA  PV E FGF+G +R AT G+      F  ++ +  D  E      QL+  IR+RKGLK
Sbjct:  579 LAAEKCQGVKVKLMDAVLHEDAIHRGPAQMIPAARFGIRDAMMQANPVLLEPMQFVYINTPQDFMGAAMREISNRRGQIL-DMEQEG-DMAIIKAKCPVAEMFGFAGAIRGATQGRCLWSIEFAGYEKVPRDMQE------QLIKQIRERKGLK 724          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METS5 (Elongation factor 2 OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 56/163 (34.36%), Postives = 92/163 (56.44%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA E +RG+   + D  +H D  HRG  Q+ P  R  I+A+ L +KP LLEP+  ++I+ P + +G + +VL++KRG V   M + G+ +  I A +PV ES+  +  LR +T G+AF    F  W  +      P +    ++  IR+RKGL +++  + +F
Sbjct:  580 LAHEPIRGVKVILHDATIHEDPAHRGPAQIYPAVRNAIFAAMLMSKPTLLEPLQKLDIRVPMEFVGNVTAVLSRKRGKVL-NMTQSGS-VARILAEIPVSESYELASDLRGSTGGRAFWGTEFSKWAPV------PDSILTDVILKIRERKGLPKELPKVEDF 734          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METMA (Elongation factor 2 OS=Methanosarcina mazei GN=fusA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 61/163 (37.42%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            L  E +  +   + D  LH DAIHRG  Q+IP +R+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG V   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +   ++V  IR+RKGLK+ +   S++
Sbjct:  573 LTREPVANVKCVLVDAKLHEDAIHRGPAQIIPASRQAIQAGMLMAEDSLLEPYQKVFVQVPQLLMGGATKELQGRRG-VILNMTTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDVV------PSSILTEIVGQIRERKGLKKDLPKASDY 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METPE (Elongation factor 2 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.673e-20
Identity = 60/157 (38.22%), Postives = 83/157 (52.87%), Query Frame = -1
Query:  375 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 845
            LA+E ++ +   + DV LH DAIHRG  QVIP  R  + A  L A   LLEP+  + I  P   +G   S +  +RG V +      T    +   +PV E FGFSG +R+AT G+A     F  ++++      P +    +V  IRKRKGLKEQM
Sbjct:  574 LADEPVQNMKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGILYAGDSLLEPIQKISITVPTDQMGNATSQIQGRRGSVLDITSEGDT--ITVVGRVPVAELFGFSGDIRSATEGRAMWNTEFAGFEIV------PNSLVKDVVIAIRKRKGLKEQM 722          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METBU (Elongation factor 2 OS=Methanococcoides burtonii (strain DSM 6242) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 58/163 (35.58%), Postives = 87/163 (53.37%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            L++E   G+  ++ D  LH DA+HRG  QVIP +R+ I A+ L A   L EP   V IQ P++ +GG    +  +RG + +      T +   KA  PV E FGF+G +R+AT G+A     F  ++ +      P +   ++V  IRKRKGLK  +    +F
Sbjct:  573 LSKEPCMGVKVKLMDAKLHEDAVHRGPAQVIPASRQAIQAAMLMADDTLFEPYQKVFIQVPQEQMGGATKEIQGRRGVIIDMTSEGDTTVIESKA--PVSELFGFAGDIRSATEGRAMWSTEFAGFEPL------PMSLMTEVVTGIRKRKGLKAALPQAEDF 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METBF (Elongation factor 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.104e-20
Identity = 62/163 (38.04%), Postives = 88/163 (53.99%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            L  E +  +   + D  LH DAIHRG  QVIP +R+ I A  L A   LLEP   V +Q P+  +GG    L  +RG +   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +    +V  IR+RKGLK+++   S+F
Sbjct:  573 LTREPVANVKCVLVDAKLHEDAIHRGPAQVIPASRQAIQAGMLMADDTLLEPYQKVFVQVPQLLMGGATKELQGRRG-IILNMSTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDIV------PTSIQNDIVGQIRERKGLKKELPKASDF 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METTE (Elongation factor 2 OS=Methanosarcina thermophila GN=fusA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 62/163 (38.04%), Postives = 88/163 (53.99%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            L  E +  +   + D  LH DAIHRG  QVIP AR+ I A  L A+  LLEP   V +Q P+  +GG    L  +RG +   M   G  L  I+A +PV E FGF+G +R+AT G+A     F  +D++      P +   ++V  IR+RKGLK  +   S++
Sbjct:  573 LTREPVANMKCVLVDAKLHEDAIHRGPAQVIPAARQAIQAGMLMAEDCLLEPYQKVFVQVPQLTMGGATKELQGRRG-IILNMTTEG-DLAIIEARVPVAEMFGFAGEIRSATEGRAMWSTEFGGFDIV------PTSIQTEVVGQIRERKGLKRDLPKASDY 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_IGNH4 (Elongation factor 2 OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=fusA PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.360e-19
Identity = 56/163 (34.36%), Postives = 85/163 (52.15%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA+E +RG+   + D V+H D  HRG  Q+ P  R  +YAS LT  P LLEP   ++I+ P + +G +  V+ + RG + E +   G     I A +P+ ESF     LR+ T+G+AF    F  W+ +      P     +L+  IR+RKGL  +     +F
Sbjct:  583 LAKEPVRGVKVILWDAVIHEDPAHRGPAQLYPAVRNAVYASMLTDSPTLLEPWQKLDIRVPNEYIGAVTGVITKHRGKILEVIDMGGQA--RIVAAVPIAESFELPMELRSVTAGRAFWGTEFYGWEPV------PDQLLPELIRKIRERKGLPPEPPKAEDF 737          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_ENCCU (Elongation factor 2 OS=Encephalitozoon cuniculi GN=EFT1 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.319e-19
Identity = 58/167 (34.73%), Postives = 84/167 (50.30%), Query Frame = -1
Query:  345 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEFEDKL 845
            L  E MRG+ FE+ D VLHADAIHRG  Q++   + +     L A P L EP+Y VEI  P    G + ++L  KRG   +    PG     I   LPV ESF F+  L++ + G+A     F H+ ++  +  +P +   + V  +RK K +         F D+L
Sbjct:  684 LIGEVMRGLKFELKDAVLHADAIHRGINQLLQPVKNLCKGLLLAAGPILYEPIYEVEITTPNDYSGAVTTILLSKRGTAEDFKTLPGNDTTMITGTLPVKESFTFNEDLKSGSRGKAGASMRFSHYSILPGNLEDPNSLMFKTVEAVRKLKKMNPAPPTPDSFFDRL 850          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.029e-19
Identity = 56/156 (35.90%), Postives = 85/156 (54.49%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E ++G+  ++ D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ +      PG    ++V  IR RKGLK +
Sbjct:  580 LAAEKVQGVKIKLMDATFHEDAIHRGPAQIIPAVRFGVRDAVSQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFEKV------PGELQPKIVKQIRDRKGLKSE 727          
The following BLAST results are available for this feature:
BLAST of CF832024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METJA2.098e-2038.96Elongation factor 2 OS=Methanocaldococcus jannasch... [more]
EF2_METS53.578e-2034.36Elongation factor 2 OS=Metallosphaera sedula (stra... [more]
EF2_METMA3.578e-2037.42Elongation factor 2 OS=Methanosarcina mazei GN=fus... [more]
EF2_METPE4.673e-2038.22Elongation factor 2 OS=Methanosphaerula palustris ... [more]
EF2_METBU6.104e-2035.58Elongation factor 2 OS=Methanococcoides burtonii (... [more]
EF2_METBF6.104e-2038.04Elongation factor 2 OS=Methanosarcina barkeri (str... [more]
EF2_METTE1.041e-1938.04Elongation factor 2 OS=Methanosarcina thermophila ... [more]
EF2_IGNH41.360e-1934.36Elongation factor 2 OS=Ignicoccus hospitalis (stra... [more]
EF2_ENCCU2.319e-1934.73Elongation factor 2 OS=Encephalitozoon cuniculi GN... [more]
EF2_METM53.029e-1935.90Elongation factor 2 OS=Methanococcus maripaludis (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832024 ID=CF832024; Name=CF832024; organism=Citrus sinensis; type=EST; length=848bp
TAATAATATATCAACCAACGTCGGCCAGAATTAGTCCTTCACATGACAGA
ACATCAAACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACA
GAGACAGGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACAC
AATGAGGATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAAT
ATTGCTGCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCG
TCCTCTACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCA
ACAAGCTGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTT
GTCCTCAAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCTCT
TCCTGATATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGA
TCGGATGACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTG
TCCTGACGTTGCAGCCCTCAAAGTGCCTGAGAATCCAAAGGACTCGATGA
CGGGAAGGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATT
TCCTCGAACACGTGACCACGTTTCTGATTGAGAACACTGTAAATACCACC
AAGGGCCTGCTCGGGAGCCTGTATTTCGACCATGTAGACAGGCTCAAGAA
GCCTGGGCTTGGCTGTGAGCTGGGAAGCATATATGACCCTCCTAGCAGTA
GGAATGACTTGACCACCACCTCTGTGAATGGCATCAGCATGAAGAACAAC
ATCACATACTTCAAAGCAGATACCTCTCATGTTCTCTTCAGCCAGCGC
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