CF832024

Overview
NameCF832024
Unique NameCF832024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:731..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METTP (Elongation factor 2 OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=fusA PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 64/163 (39.26%), Postives = 90/163 (55.21%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            +  E ++GI  ++ DV LH DA+HRG  QVIP  R+ + A  L A P LLEP+  V IQ P+  +GG  S +  +RG V   M+  G  +  IKA +PV E FGF+G +R+AT G+A     F  ++ +      P       V  IR RKGLK +M   S++
Sbjct:  573 ICREPVQGIKAKLVDVKLHEDAVHRGPAQVIPAVRQAVQAGILMANPTLLEPMQYVFIQVPQDQMGGAMSEIQGRRG-VILSMETEG-DMITIKAKMPVAEMFGFAGAIRSATEGRALWSTEFAGFEPI------PANMMLDTVRQIRTRKGLKPEMPTPSDY 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_PYRAR (Elongation factor 2 OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=fusA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.716e-22
Identity = 59/163 (36.20%), Postives = 92/163 (56.44%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA+E MRG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P LLEP+  ++I+     +G + SVLN+ RG + +  Q+    +  ++A LPV+ESF  S  LRAA +G+ F    F  W         P +     V  +RK+KGLKE +   ++F
Sbjct:  582 LAQEPMRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAVLSARPTLLEPLVRLDIKVAPDYIGSVTSVLNKHRGKILDMTQQ--EYMAYLRAELPVLESFTISDELRAAAAGKIFWSMQFARWAPY------PESMLVDFVKQLRKKKGLKEDIPKPTDF 736          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_PYRCJ (Elongation factor 2 OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 2.241e-22
Identity = 57/163 (34.97%), Postives = 93/163 (57.06%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA+E +RG+   + D V+H D  HRG  Q++P  +  I+A+ L+A+P +LEP+  ++I+     +G + SV+N+ RG + +  Q+       ++A LPV+ESF  S  LRAA +G+ F    F  W         P +  A  V  +RK+KGLKE++   ++F
Sbjct:  582 LAQEPIRGVKVVLVDAVVHEDPAHRGPAQIMPATKNAIFAAFLSARPTILEPLVRLDIKVAPDYIGAVTSVINKHRGKILDMTQQEYMAF--LRAELPVLESFTISDELRAAAAGKIFWSMQFSRWAPY------PESMLADFVKQLRKKKGLKEEIPKPTDF 736          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METB6 (Elongation factor 2 OS=Methanoregula boonei (strain 6A8) GN=fusA PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.521e-22
Identity = 64/163 (39.26%), Postives = 88/163 (53.99%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA+E ++ +   + DV LH DAIHRG  QVIP  R  I    L A   LLEPV  ++I  P   +G   S +  +RG VF +MQ  G  +  +    PV E FGF+G +R+AT G+A     F  ++++      P      +V  IRKRKGLKEQM   S++
Sbjct:  574 LADEPVQNLKMTLTDVKLHEDAIHRGPAQVIPAVRGAIKGGMLIAGDSLLEPVQKIQISVPMDQMGAATSQIQGRRGQVF-DMQSEGDTI-TVVGKAPVAELFGFAGDIRSATEGRAMWNTEFAGFELV------PNNLVKDVVVAIRKRKGLKEQMPTPSDY 728          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METMJ (Elongation factor 2 OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=fusA PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.112e-21
Identity = 61/157 (38.85%), Postives = 86/157 (54.78%), Query Frame = -1
Query:  375 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 845
            LA+E ++ +   + DV LH DAIHRG  QVIP  R  + A  L A   LLEP+  ++I  P + +G   S +  +RG VF+ +    T    I    PV E FGF+G +R+AT G+A     F  ++++      P      +V DIRKRKGLKEQ+
Sbjct:  574 LADELVQNLKIRLVDVKLHEDAIHRGPAQVIPAVRSAVKAGVLMAGDSLLEPIQKIQITVPSEQMGAATSQIQGRRGQVFDMLSEGDT--MTIVGKAPVAELFGFAGDIRSATEGRAMWSTEFAGFELV------PAGIVNDVVKDIRKRKGLKEQI 722          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_DESMO (Elongation factor 2 OS=Desulfurococcus mobilis GN=fusA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 60/163 (36.81%), Postives = 88/163 (53.99%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LTAKP +LEP+  ++I+ P + +G I +V+ +KRG + E  Q   +    + A +PV ESF  +  LR  T+G+A     F  W  +      P +    LV+ IR RKGLK +   L +F
Sbjct:  577 LAMEPVRGVKVVLHDAVVHEDPAHRGPAQIFPAVRNAIFAGFLTAKPTILEPILKLDIRTPMEYIGNISTVITKKRGKLIEVQQMETSA--RVIAEIPVSESFDIADMLRNVTAGKAIWGQEFSRWAPV------PESMLMDLVSKIRTRKGLKPEPPKLEDF 731          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_DESK1 (Elongation factor 2 OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=fusA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 60/163 (36.81%), Postives = 87/163 (53.37%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LTA+P +LEP+  ++I++P + +G I SV+ +KRG + E  Q   T    + A +PV ESF  +  LR  T+G+A     F  W  +      P      L+A IR RKGLK +     +F
Sbjct:  579 LAMEPVRGVKVVLHDAVIHEDPAHRGPAQIFPAVRNAIFAGFLTARPTILEPILKLDIRSPMEYIGNISSVITKKRGKLIEVQQMETTA--RVIAEIPVSESFDIADMLRNVTAGKAIWGQEFSRWAPV------PENMLMDLIAKIRTRKGLKPEPPKPEDF 733          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_AERPE (Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 61/153 (39.87%), Postives = 88/153 (57.52%), Query Frame = -1
Query:  387 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 845
            LA E +RG+   + D V+H D +HRG GQ+ P  R  I+A  L  +P LLEP+  ++I+AP + L  I +VL +KRG +   ++  G  +  I A +PV ESF  +G LR+AT+G+AF    F  W  +      P      L+A IR+RKGL
Sbjct:  579 LAAEPVRGVKVVLHDAVIHEDPVHRGPGQLYPAVRNAIWAGILDGRPTLLEPLQKLDIRAPMEYLSNITAVLTRKRGRII-NVETTGV-MARIIAAIPVAESFDLAGELRSATAGRAFWGVEFYGWAPV------PDQMLQDLIAKIRQRKGL 723          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_SULTO (Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA PE=3 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 56/163 (34.36%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA E +RG+   + D ++H D  HRG  Q+ P  R  I+A  LT+KP LLEP+  ++I+ P   +G +  V+ +KRG +    Q     +  I A +PV ESF  +  LRAA++G+AF    F  W  +      P +    ++  IR+RKGL +++  + +F
Sbjct:  581 LAHEPIRGLKVVLHDAIIHEDPAHRGPAQLYPAVRNAIFAGFLTSKPTLLEPLQKLDIRVPMDFVGNVSGVITRKRGKILNMTQMGS--IARITAEIPVSESFELASELRAASAGRAFWGTEFSRWAPV------PDSLLLDVIMKIRERKGLPKELPKVEDF 735          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_SULSO (Elongation factor 2 OS=Sulfolobus solfataricus GN=fusA PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 9.416e-21
Identity = 55/163 (33.74%), Postives = 89/163 (54.60%), Query Frame = -1
Query:  357 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 845
            LA E +RG+   + D V+H D  HRG  Q+ P  R  I+A  LT++P LLEP+  ++I+ P   +G + +V+ +KRG + +  Q     +  I A +PV ES+  +  LR +T G+AF    F  W  +      P +    +V  IR+RKGL +++  + +F
Sbjct:  580 LAHEPIRGVKVILHDAVIHEDPAHRGPAQIYPAVRNSIFAGFLTSRPTLLEPIQKLDIRVPADLIGNVTAVITRKRGKILDVSQIAN--MSRITAEIPVSESYDMASELRGSTGGRAFWGTEFSRWAPV------PDSILLDVVTKIRERKGLPKELPKVEDF 734          
The following BLAST results are available for this feature:
BLAST of CF832024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METTP1.314e-2239.26Elongation factor 2 OS=Methanosaeta thermophila (s... [more]
EF2_PYRAR1.716e-2236.20Elongation factor 2 OS=Pyrobaculum arsenaticum (st... [more]
EF2_PYRCJ2.241e-2234.97Elongation factor 2 OS=Pyrobaculum calidifontis (s... [more]
EF2_METB66.521e-2239.26Elongation factor 2 OS=Methanoregula boonei (strai... [more]
EF2_METMJ1.112e-2138.85Elongation factor 2 OS=Methanoculleus marisnigri (... [more]
EF2_DESMO3.236e-2136.81Elongation factor 2 OS=Desulfurococcus mobilis GN=... [more]
EF2_DESK13.236e-2136.81Elongation factor 2 OS=Desulfurococcus kamchatkens... [more]
EF2_AERPE3.236e-2139.87Elongation factor 2 OS=Aeropyrum pernix GN=fusA PE... [more]
EF2_SULTO9.416e-2134.36Elongation factor 2 OS=Sulfolobus tokodaii GN=fusA... [more]
EF2_SULSO9.416e-2133.74Elongation factor 2 OS=Sulfolobus solfataricus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832024 ID=CF832024; Name=CF832024; organism=Citrus sinensis; type=EST; length=848bp
TAATAATATATCAACCAACGTCGGCCAGAATTAGTCCTTCACATGACAGA
ACATCAAACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACA
GAGACAGGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACAC
AATGAGGATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAAT
ATTGCTGCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCG
TCCTCTACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCA
ACAAGCTGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTT
GTCCTCAAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCTCT
TCCTGATATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGA
TCGGATGACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTG
TCCTGACGTTGCAGCCCTCAAAGTGCCTGAGAATCCAAAGGACTCGATGA
CGGGAAGGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATT
TCCTCGAACACGTGACCACGTTTCTGATTGAGAACACTGTAAATACCACC
AAGGGCCTGCTCGGGAGCCTGTATTTCGACCATGTAGACAGGCTCAAGAA
GCCTGGGCTTGGCTGTGAGCTGGGAAGCATATATGACCCTCCTAGCAGTA
GGAATGACTTGACCACCACCTCTGTGAATGGCATCAGCATGAAGAACAAC
ATCACATACTTCAAAGCAGATACCTCTCATGTTCTCTTCAGCCAGCGC
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