CF832024

Overview
NameCF832024
Unique NameCF832024
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length848
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1001 contig Csv1_Contig1001:731..1578. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 57/156 (36.54%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA+E   G+ F++ D  LH DA+HRG  QV+P  R  IYAS ++A P LLEP+  V I  P+  +G     +  +RG + +  Q     +  I++ +PV E FGF+G +R+A  G    +C++     MS     P     Q+V +IR+RKGL  +
Sbjct:  574 LAKEIAMGLKFKLHDAKLHEDAVHRGPAQVLPAIRNAIYASMMSAGPTLLEPMQKVFINTPQDYMGPCTREIQNRRGQIVDMGQE--GDMATIESKVPVAEMFGFAGDIRSAAEG----RCLWS--TEMSGFERLPREMQNQIVKEIRQRKGLSPE 721          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = -1
Query:  387 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGTQAAQLVADIRKRKGL 764
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +RKRKGL
Sbjct:  966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METKA (Elongation factor 2 OS=Methanopyrus kandleri GN=fusA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 58/166 (34.94%), Postives = 87/166 (52.41%), Query Frame = -1
Query:  351 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLK-EQMTPLSEFED 845
            LA+E  RG+   + D  +H D +HRG  QVIP  +R IY   L A   LLEP+  + +  P+  +G +   +  +RG + EE+Q+ G  +  IK   PV E FGF+  +R+AT G+A        ++ +      P     Q++ +IR+RKGLK E   P    ED
Sbjct: 1097 LAKEPCRGVKVSLVDAEIHEDPVHRGPAQVIPAIKRAIYGGMLLADTHLLEPMQYIYVTVPQDYMGAVTKEIQGRRGTI-EEIQQEGDTVI-IKGKAPVAEMFGFANDIRSATEGRAIWTTEHAGYERV------PEELEEQIIREIRERKGLKPEPPKPEDYIED 1254          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 55/156 (35.26%), Postives = 84/156 (53.85%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E  +G+  ++ D   H DAIHRG  Q+IP  R  +  +  +AKP LLEP+  + I  P+  +G     +N +RG +  +M++ G  +  IK  +PV E FGF+G +R AT G+      F  ++ +      P     ++VA IR RKGLK +
Sbjct:  580 LASERAQGVKIKLIDATFHEDAIHRGPSQIIPAIRFGVRDAVSSAKPILLEPMQKIYINTPQDYMGDAIREINNRRGQIV-DMEQEG-DMAIIKGSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERV------PNEIQTKVVAQIRDRKGLKSE 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = -1
Query:  387 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGTQAAQLVADIRKRKGL 764
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +RKRKGL
Sbjct:  959 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 50/142 (35.21%), Postives = 80/142 (56.34%), Query Frame = -1
Query:  387 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL-EPGTQ---------------AAQLVADIRKRKGL 764
            GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++++RG V +E  + GTP + +KA +PV+ESFGF+  +   TSG A+PQ +F  ++M+  +P   P T+               A + + ++RKRKGL
Sbjct:  841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGL 982          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  580 LAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPNE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  580 LAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.564e-18
Identity = 55/156 (35.26%), Postives = 86/156 (55.13%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  580 LAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CF832024 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 56/156 (35.90%), Postives = 87/156 (55.77%), Query Frame = -1
Query:  378 LAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 845
            LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG + E+M++ G  + ++ A +PV   FGF+  +R AT G+     V   ++      + P  Q + +V  IR+RKGL+++
Sbjct:  575 LANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRVLLEPVQRVFINVPQEEMGAAINEIQQRRG-IIEDMKQEGDEI-SLTAKVPVAGMFGFASAIRGATGGK-----VLWSFENAGYQKVPPELQDS-IVRSIRERKGLRQE 722          
The following BLAST results are available for this feature:
BLAST of CF832024 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METS33.956e-1936.54Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
ETUD1_MOUSE5.167e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]
EF2_METKA5.167e-1934.94Elongation factor 2 OS=Methanopyrus kandleri GN=fu... [more]
EF2_METVS6.748e-1935.26Elongation factor 2 OS=Methanococcus vannielii (st... [more]
ETUD1_HUMAN8.813e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]
RIA1_SCHPO2.564e-1835.21Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
EF2_METMP2.564e-1835.26Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METM72.564e-1835.26Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM62.564e-1835.26Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_THEAC5.713e-1835.90Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01D01_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01D01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832024 ID=CF832024; Name=CF832024; organism=Citrus sinensis; type=EST; length=848bp
TAATAATATATCAACCAACGTCGGCCAGAATTAGTCCTTCACATGACAGA
ACATCAAACCTTAAAAGCTGTGAATTGTAAAATTTAAAACCTAGATGACA
GAGACAGGGTTACTAAACCCAATCAACAGTAATATTACTTTACTAAACAC
AATGAGGATATTGAAAAACTTTGAAACAAAAATAAGCATCAGCAAAAAAT
ATTGCTGCGCAATCTCACCCTTGATGTCAAGATGAAATGTTTACAGCTCG
TCCTCTACTCGGATAGCGGTGTCATTTGCTCCCTCTTCCTGATATCAGCA
ACAAGCTGCGCAATCTCACCCTTGATGTCAAGACGAAATGTTTACAGCTT
GTCCTCAAACTCAGATAGTGGTGTCATTTGCTCCTTCAAGCCCTTCCTCT
TCCTGATATCAGCAACAAGCTGTGCAGCCTGTGTACCAGGCTCCAGTGGA
TCGGATGACATCATGTCCCAGTGATCAAACACACATTGTGGGAAGGCCTG
TCCTGACGTTGCAGCCCTCAAAGTGCCTGAGAATCCAAAGGACTCGATGA
CGGGAAGGTAAGCCTTGATGTTGTAAAGGGGGGTACCAGGTCTCTGCATT
TCCTCGAACACGTGACCACGTTTCTGATTGAGAACACTGTAAATACCACC
AAGGGCCTGCTCGGGAGCCTGTATTTCGACCATGTAGACAGGCTCAAGAA
GCCTGGGCTTGGCTGTGAGCTGGGAAGCATATATGACCCTCCTAGCAGTA
GGAATGACTTGACCACCACCTCTGTGAATGGCATCAGCATGAAGAACAAC
ATCACATACTTCAAAGCAGATACCTCTCATGTTCTCTTCAGCCAGCGC
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