CF832072

Overview
NameCF832072
Unique NameCF832072
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10238 contig Csv1_Contig10238:1066..1682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: KSG1_ARATH (Shaggy-related protein kinase alpha OS=Arabidopsis thaliana GN=ASK1 PE=2 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.509e-18
Identity = 41/57 (71.93%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 QRMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFK 173
            +RMP EA+DL SRL+Q+SP+L+  AL+   HPFFDELR+PNARLPNGR LPPLFNFK
Sbjct:  320 KRMPPEAVDLVSRLLQYSPNLRSAALDTLVHPFFDELRDPNARLPNGRFLPPLFNFK 376          

HSP 2 Score: 22.7126 bits (47), Expect = 1.509e-18
Identity = 7/14 (50.00%), Postives = 12/14 (85.71%), Query Frame = 1
Query:  199 ELVNKLIPDHGKRQ 240
            E+V KL+P+H ++Q
Sbjct:  386 EMVAKLVPEHARKQ 399          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: MSK1_TOBAC (Shaggy-related protein kinase NtK-1 OS=Nicotiana tabacum GN=NTK-1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.251e-18
Identity = 42/57 (73.68%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 QRMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFK 173
            +RMP EA+DL SRL+Q+SP+L+ TALEA  H FFDELR+PN RLPNGR LPPLFNFK
Sbjct:  324 KRMPPEAVDLVSRLLQYSPNLRCTALEAVTHAFFDELRDPNTRLPNGRVLPPLFNFK 380          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: MSK3_MEDSA (Glycogen synthase kinase-3 homolog MsK-3 OS=Medicago sativa GN=MSK-3 PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 5.607e-18
Identity = 40/57 (70.18%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    3 QRMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFK 173
            +RMP EA+DL SRL+Q+SP+L+ TALEA  HPF+D++R+PN RLPNGR LPPLFNFK
Sbjct:  325 KRMPPEAVDLVSRLLQYSPNLRSTALEALVHPFYDDVRDPNTRLPNGRFLPPLFNFK 381          

HSP 2 Score: 21.1718 bits (43), Expect = 5.607e-18
Identity = 7/17 (41.18%), Postives = 12/17 (70.59%), Query Frame = 1
Query:  199 ELVNKLIPDHGKRQLGL 249
            E++ KL+P H ++Q  L
Sbjct:  391 EMLVKLVPPHARKQCAL 407          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: MSK1_MEDSA (Glycogen synthase kinase-3 homolog MsK-1 OS=Medicago sativa GN=MSK-1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.708e-17
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 3
Query:    3 QRMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNFK 173
            +RMP+EA+DL SRL+Q+SP+L+  AL+   HPFFDELR+PNARLP GR LPPLFNFK
Sbjct:  326 KRMPAEAVDLVSRLLQYSPNLRCQALDCLTHPFFDELRDPNARLPTGRFLPPLFNFK 382          

HSP 2 Score: 20.4014 bits (41), Expect = 2.708e-17
Identity = 6/14 (42.86%), Postives = 11/14 (78.57%), Query Frame = 1
Query:  199 ELVNKLIPDHGKRQ 240
            E + KL+P+H ++Q
Sbjct:  392 ETLMKLVPEHARKQ 405          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: KSG2_ARATH (Shaggy-related protein kinase beta OS=Arabidopsis thaliana GN=ASK2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.138e-17
Identity = 42/62 (67.74%), Postives = 54/62 (87.10%), Query Frame = 3
Query:    3 QRMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNF-KQELS 185
            +++  EA+DLASRL+Q+SP+L+ TALEACAHPFFD+LR+P A LPNGR LPPLF+F  QEL+
Sbjct:  353 RQVSPEAMDLASRLLQYSPNLRCTALEACAHPFFDDLRDPRASLPNGRALPPLFDFTAQELA 414          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3B_SPECI (Glycogen synthase kinase-3 beta OS=Spermophilus citellus GN=GSK3B PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNF-KQELS 185
            R P EAI L SRL++++P+ + T LEACAH FFDELR+PN +LPNGR  P LFNF  QELS
Sbjct:  308 RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS 368          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3B_RAT (Glycogen synthase kinase-3 beta OS=Rattus norvegicus GN=Gsk3b PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNF-KQELS 185
            R P EAI L SRL++++P+ + T LEACAH FFDELR+PN +LPNGR  P LFNF  QELS
Sbjct:  308 RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS 368          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3B_MOUSE (Glycogen synthase kinase-3 beta OS=Mus musculus GN=Gsk3b PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNF-KQELS 185
            R P EAI L SRL++++P+ + T LEACAH FFDELR+PN +LPNGR  P LFNF  QELS
Sbjct:  308 RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS 368          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: GSK3B_HUMAN (Glycogen synthase kinase-3 beta OS=Homo sapiens GN=GSK3B PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.672e-14
Identity = 39/61 (63.93%), Postives = 47/61 (77.05%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELREPNARLPNGRPLPPLFNF-KQELS 185
            R P EAI L SRL++++P+ + T LEACAH FFDELR+PN +LPNGR  P LFNF  QELS
Sbjct:  308 RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDELRDPNVKLPNGRDTPALFNFTTQELS 368          
BLAST of CF832072 vs. ExPASy Swiss-Prot
Match: SGG_DROME (Protein kinase shaggy OS=Drosophila melanogaster GN=sgg PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    6 RMPSEAIDLASRLMQHSPSLQ*TALEACAHPFFDELR-EPNARLPNGRPLPPLFNF-KQELSV 188
            R P+EAI+L S L++++PS + T L+ACAHPFFDELR E N  LPNGR +PPLFNF + ELS+
Sbjct:  859 RTPTEAINLVSLLLEYTPSARITPLKACAHPFFDELRMEGNHTLPNGRDMPPLFNFTEHELSI 921          
The following BLAST results are available for this feature:
BLAST of CF832072 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
KSG1_ARATH1.509e-1871.93Shaggy-related protein kinase alpha OS=Arabidopsis... [more]
MSK1_TOBAC4.251e-1873.68Shaggy-related protein kinase NtK-1 OS=Nicotiana t... [more]
MSK3_MEDSA5.607e-1870.18Glycogen synthase kinase-3 homolog MsK-3 OS=Medica... [more]
MSK1_MEDSA2.708e-1770.18Glycogen synthase kinase-3 homolog MsK-1 OS=Medica... [more]
KSG2_ARATH6.138e-1767.74Shaggy-related protein kinase beta OS=Arabidopsis ... [more]
GSK3B_SPECI1.672e-1463.93Glycogen synthase kinase-3 beta OS=Spermophilus ci... [more]
GSK3B_RAT1.672e-1463.93Glycogen synthase kinase-3 beta OS=Rattus norvegic... [more]
GSK3B_MOUSE1.672e-1463.93Glycogen synthase kinase-3 beta OS=Mus musculus GN... [more]
GSK3B_HUMAN1.672e-1463.93Glycogen synthase kinase-3 beta OS=Homo sapiens GN... [more]
SGG_DROME1.084e-1361.90Protein kinase shaggy OS=Drosophila melanogaster G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01E07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01E07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832072 ID=CF832072; Name=CF832072; organism=Citrus sinensis; type=EST; length=618bp
CACAACGGATGCCTTCTGAGGCTATTGATCTTGCTTCACGCCTGATGCAG
CATTCACCAAGTCTCCAATGAACAGCGCTAGAAGCATGTGCACATCCTTT
CTTTGATGAACTGCGTGAGCCAAATGCTCGCCTACCAAATGGCCGCCCAC
TGCCACCTCTCTTCAACTTTAAACAGGAATTATCGGTGGGCTTCACCAGA
GCTTGTTAATAAGTTGATACCAGACCATGGGAAACGGCAATTAGGTCTGA
ATTTCTTGCATCCAGCCGGGACATAGGTCTAGACAAGTAATATAGAAGTG
AAATCTACTTGGTGATGTGTAGCACAAAGGGAATTATATCCTTGTTCGTA
ACTGCCATGCATTGAGGCTTAATCAACATCAGATGTTGCTCGATCAGCAA
GCCTACATTCTCAGGCAGCTATGCTTTTCTTGGTGCCTTCTTTTTCTGCT
TTTCCATCCTCCTGTGTCTCCTCCCCACTTCGTCCCACCCCCCCTCCTCT
GTTAAAGTTCCCATTTGTTTATGTACATGTTTGATAGTAAAGATAGGTTA
AGTTGATAAGGTGGACTGATCAGACTGCTGTTAGTAGAGGAAAAACTGAG
GAAAAATGTATTTGTACC
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