CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP323_ARATH (Pentatricopeptide repeat-containing protein At4g19191, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E1 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEG 297
            G+L  AC+IHR +++ E AA  +F  + +    YV + N+YAA+G WD  A++R +M+++ +   PG S ++V G+ H+F  G++ H + + I   L G
Sbjct:  531 GALLNACKIHRNVKIAEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVNGKNHSFTVGEHGHVENEVIYFTLNG 629          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP183_ARATH (Pentatricopeptide repeat-containing protein At2g34370, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H25 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.799e-13
Identity = 58/198 (29.29%), Postives = 90/198 (45.45%), Query Frame = 1
Query:   19 CRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSE---YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            C +  +LELG+  A  I + D   +        L AA      + K++ L   + +  DP       K  +H F +GD  H       S       +M  +GF  +    +V++++ E  +  +F   S  LA A  +IN+    P+ V +N+ TC   HNT K IS I  R +  RD + +H +K+G CSC D  YW
Sbjct:  287 CWVQGYLELGDRFAELIKKLDASRMSKESN-AGLVAAKASDSAMEKLKELRYCQMIRDDP-------KKRMHEFRAGDTSHLGTV---SAFRSLKVQMLDIGFVPATRVCFVTVEEEEKEEQLLF--RSNKLAFAHAIINSEARRPLTVLQNMRTCIDGHNTFKMISLITGRALIQRDKKKYHFYKNGVCSCKD--YW 469          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR13_ARATH (Pentatricopeptide repeat-containing protein At1g05750, chloroplastic OS=Arabidopsis thaliana GN=PDE247 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 39/99 (39.39%), Postives = 56/99 (56.57%), Query Frame = 1
Query:    1 GSLTIACRIH-RWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLE 294
            GSL  AC  H   + L E    H+ + + +    YV+L N+YAA GKW+  +K+RR M+  GL   PG S +E+   +H F++GDN H +   I  VLE
Sbjct:  379 GSLLAACSNHGNNIVLAERLMKHLTDLNVKSHSNYVILSNMYAADGKWEGASKMRRKMKGLGLKKQPGFSSIEIDDCMHVFMAGDNAHVETTYIREVLE 477          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP280_ARATH (Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 34/103 (33.01%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKM 312
            +L  AC+    + L + AA +I + D  +   +VLLC+++A+SG W+  A +R  M++  +   PG SW+E++ ++H F + D FHP+  +I +VL   + +M
Sbjct:  647 TLLSACKTQGNVHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDKIHIFFAEDIFHPERDDIYTVLHNIWSQM 749          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP119_ARATH (Putative pentatricopeptide repeat-containing protein At1g74400 OS=Arabidopsis thaliana GN=PCMP-E68 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.149e-12
Identity = 42/95 (44.21%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSG-DNFHPQIK--EINSVL 291
            AC +H  +ELGE     IFE D  HVG YV L N+YA+ G WDE +K+R  +R++ +   PG SW+E+   ++ F+SG DN   Q+   EI+ VL
Sbjct:  353 ACSLHGNVELGEEVQRRIFELDRDHVGDYVALSNIYASKGMWDEKSKMRDRVRKRRM---PGKSWIELGSIINEFVSGPDNNDEQLMMGEISEVL 444          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR15_ARATH (Pentatricopeptide repeat-containing protein At1g06145 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 37/110 (33.64%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGL-TIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF 327
            G+L   CRIH+ L + E+A   +   +  + GYY LL ++YA   +W +VA++R  MRE G+  I PG S + +    H F + D  H    E+  +L+  Y++M   G+
Sbjct:  460 GALLDGCRIHKNLVIAEIAFNKLMVLEPMNSGYYFLLVSMYAEQNRWRDVAEIRGRMRELGIEKICPGTSSIRIDKRDHLFAAADKSHSASDEVCLLLDEIYDQMGLAGY 569          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP202_ARATH (Pentatricopeptide repeat-containing protein At2g45350, chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.960e-12
Identity = 33/75 (44.00%), Postives = 46/75 (61.33%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAF 240
            AC  H+  E GEL A H+      +   YVLL N+YA+ G W +V +VR +M+E+ +   PGCSW+E+ G VH F
Sbjct:  528 ACSHHKEFETGELVAKHLILQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWIELDGRVHEF 602          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR83_ARATH (Putative pentatricopeptide repeat-containing protein At1g56570 OS=Arabidopsis thaliana GN=PCMP-E64 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 39/110 (35.45%), Postives = 60/110 (54.55%), Query Frame = 1
Query:    1 GSLTIACRIHRWLEL-GELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF 327
            G++  AC+ H+   L   LAA  + E   + VG YV+L  +YAA GKW + A+VR++MR  G   + G SW+ V+ +V +F   D   P    + SVL    E+ +  G+
Sbjct:  487 GAILGACKAHKHNGLISRLAARKVMELKPKMVGTYVMLSYIYAAEGKWVDFARVRKMMRMMGNKKEAGMSWILVENQVFSFAVSDKMCPNASSVYSVLGLLIEETREAGY 596          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP357_ARATH (Pentatricopeptide repeat-containing protein At4g39530 OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAV 321
            SL   C     +EL E AA     +D +  G + +L N+YA+ G W E  KVR  M+ +G+  +PG SW+ +  EVH FLS D  H +  +I  VL+    +++ V
Sbjct:  728 SLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMWTEAKKVRERMKVEGVVKEPGRSWIGINKEVHIFLSKDKSHCKANQIYEVLDDLLVQIRGV 833          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP197_ARATH (Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.560e-12
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 1
Query:    7 LTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKM 312
            L  A R H  +ELG L+A  +   +      YV L NLY  +G  +E AK+  LM+EKGL   PGCSW+EV    + F SG +  P   EI +VL      M
Sbjct:  752 LLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGSSSPMKAEIFNVLNRLKSNM 853          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PP323_ARATH8.799e-1335.35Pentatricopeptide repeat-containing protein At4g19... [more]
PP183_ARATH8.799e-1329.29Pentatricopeptide repeat-containing protein At2g34... [more]
PPR13_ARATH1.149e-1239.39Pentatricopeptide repeat-containing protein At1g05... [more]
PP280_ARATH1.149e-1233.01Pentatricopeptide repeat-containing protein At3g53... [more]
PP119_ARATH1.149e-1244.21Putative pentatricopeptide repeat-containing prote... [more]
PPR15_ARATH1.960e-1233.64Pentatricopeptide repeat-containing protein At1g06... [more]
PP202_ARATH1.960e-1244.00Pentatricopeptide repeat-containing protein At2g45... [more]
PPR83_ARATH2.560e-1235.45Putative pentatricopeptide repeat-containing prote... [more]
PP357_ARATH2.560e-1235.85Pentatricopeptide repeat-containing protein At4g39... [more]
PP197_ARATH2.560e-1240.20Pentatricopeptide repeat-containing protein At2g40... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
back to top