CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP425_ARATH (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.804e-43
Identity = 84/197 (42.64%), Postives = 125/197 (63.45%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            ACR+   +E+G+  A  + +      G YV L N+YA+ G W EV+++R  M+EK +  DPGCS +++ G +H F+  D+ HP+ KEINS+L    +K++  G+   +  V ++  E  K  +   HSE +A AFGLI+T+PG PI + KNL  C  CH+++K ISK+ +R I VRD + FHHF+DG+CSC D  YW
Sbjct:  452 ACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNLRICEDCHSSIKLISKVYKRKITVRDRKRFHHFQDGSCSCMD--YW 646          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.663e-43
Identity = 88/197 (44.67%), Postives = 121/197 (61.42%), Query Frame = 1
Query:   19 CRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVE-VKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            CRIH  +ELGE AA  I E  + H G Y LL NLYA +G+W +V ++R LMR KG+   PGCSWVE +KG    F  GD  HP  KEI  VL    +++K +G+   + +   D  +  K ++   HSE LA+A+G++ T  G  I +TKNL  C  CH    ++S+I+  DI +RD+  FHHFK+G+CSC  +GYW
Sbjct:  657 CRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSC--KGYW 850          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.783e-43
Identity = 89/201 (44.28%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            SL  A R+++ LELG LA+  + E +T + G YVLL N+YA S  WD V+ VR+ M+ KG+   PGCS +EV GEVH F  GD  HP+  +I++V +    +++  G+ A +  V  D  E  K +  C HSE  A+AFG+++    +PI + KNL  C  CH     ISKI  R+I VRD   FHHFKDG CSC   G+W
Sbjct:  414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSC--NGFW 612          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 8.159e-43
Identity = 88/199 (44.22%), Postives = 120/199 (60.30%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG---SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            ACR+H  +ELGE    H+ E      G YVLL N Y+  GKW++V ++R LM+EK +   PGCS +E++G VH F+  D  HP+ +EI  +L    +++K  G+     SE  +++ SE  K      HSE LA+AFG++ T PG  I VTKNL TC  CHN  KF+S +  R + VRD   FHHFK G+CSC D  +W
Sbjct:  396 ACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLE-SEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCND--FW 591          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.066e-42
Identity = 83/198 (41.92%), Postives = 122/198 (61.62%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKM-KAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 591
            +L  ACR H   E+GE+AA  + E + ++ G  VL+ N++A  G+W++V KVR  M+  G+   PGCSW+E+ G+VH F + D  HP+ KEI   L     K+ + VG+ A +++V  +  E  K ++  GHSE +A+A+GL+ T     + +TKNL  C  CH   K +SK+ RRDI +RD   FHHF+ G CSCGD
Sbjct:  761 ALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGD 958          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.392e-42
Identity = 90/203 (44.33%), Postives = 121/203 (59.61%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAE-IFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G+L  ACRIH+ +ELGE     +   D  H G YV   N++A   KWD+ A+ RRLM+E+G+   PGCS + ++G  H FL+GD  HP+I++I S       K++  G+    E + +D  +  + E I   HSE LA+ +GLI T PG  I + KNL  C  CH   K ISKI +RDI +RD   FHHF+DG CSCGD  YW
Sbjct:  420 GALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGD--YW 620          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.818e-42
Identity = 91/200 (45.50%), Postives = 120/200 (60.00%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSE---YVSMDKSEASKAEIFCG-HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            ACR H+ + L E AA  +          YV+L N+YA + KW+E+A VR+ MR K +   PGCSW+EVK + H F++ D  HP I+E+N  LE   +KMK VG+   +    V  D++     E+  G HSE LAVAFGL++T  G  + V KNL  C  CHN +KF+S +  R+I VRD   FH FKDG CSCGD  YW
Sbjct:  524 ACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGD--YW 721          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.818e-42
Identity = 91/201 (45.27%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +L  ACR    LE+G+ AA  + E D  H   Y LL ++YA+ GKWD VA++RR MREK +  +PG SW++ KG++H+F + D   P + +I + LE    K+   G+   + +V  D  EA K ++   HSE LA+AFGLI    G PI V KNL  C  CHN  K IS +  R+I VRD   FH FKDGTCSCGD  +W
Sbjct:  545 TLLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGD--FW 743          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP354_ARATH (Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.100e-42
Identity = 85/197 (43.15%), Postives = 123/197 (62.44%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +C++H    LG+  A ++   + ++ G YVLL N+YA+ G ++ VAKVR LM+EKG+  +PG S +E++ +VH F +GD  H + KEI ++L    E++K+ G+   +  V  D  E  K +    HSE LA+A+GLI+T PG P+ + KNL  C  CH   K ISKI  R I +RD   FHHF DG+CSCGD  +W
Sbjct:  438 SCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIVMRDRNRFHHFTDGSCSCGD--FW 632          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP210_ARATH (Pentatricopeptide repeat-containing protein At3g03580 OS=Arabidopsis thaliana GN=PCMP-H23 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.100e-42
Identity = 90/198 (45.45%), Postives = 114/198 (57.58%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS--EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 591
            S+  ACR    +E  E  +  I E +    GY +L  N YAA  KWD+V+ +R+ +++K +T +PG SW+EV   VH F SGD+  PQ + I   LE  Y  M   G+     E     + E  K  + CGHSE LA+AFGL+NT PG P+ V KNL  C  CH   K ISKIV R+I VRD   FH FKDGTCSC D
Sbjct:  683 SVLRACRTSGDMETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEVGKNVHVFSSGDDSAPQSEAIYKSLEILYSLMAKEGYIPDPREVSQNLEEEEEKRRLICGHSERLAIAFGLLNTEPGTPLQVMKNLRVCGDCHEVTKLISKIVGREILVRDANRFHLFKDGTCSCKD 880          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PP425_ARATH2.804e-4342.64Pentatricopeptide repeat-containing protein At5g48... [more]
PP390_ARATH3.663e-4344.67Pentatricopeptide repeat-containing protein At5g16... [more]
PP410_ARATH4.783e-4344.28Putative pentatricopeptide repeat-containing prote... [more]
PP267_ARATH8.159e-4344.22Pentatricopeptide repeat-containing protein At3g47... [more]
PP296_ARATH1.066e-4241.92Pentatricopeptide repeat-containing protein At3g63... [more]
PP449_ARATH1.392e-4244.33Pentatricopeptide repeat-containing protein At5g66... [more]
PP274_ARATH1.818e-4245.50Pentatricopeptide repeat-containing protein At3g49... [more]
PP108_ARATH1.818e-4245.27Putative pentatricopeptide repeat-containing prote... [more]
PP354_ARATH3.100e-4243.15Pentatricopeptide repeat-containing protein At4g37... [more]
PP210_ARATH3.100e-4245.45Pentatricopeptide repeat-containing protein At3g03... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
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