CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.716e-38
Identity = 83/201 (41.29%), Postives = 122/201 (60.70%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G+L  AC+IH+ +++ ELA   + E +  ++GYYVL+ N+Y+ S   + + ++R +MRE+     PG S+VE KG VH FL+GD  H Q +E++ +L+    +   +  AG+  +  D+ E   +     HSE LA+AFG++N+ PG  I V KNL  C  CH  +K +SKIV R   VRD   FH+FKDG CSC D  YW
Sbjct:  430 GALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL--ETSVMELAGN--MDCDRGE-EVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD--YW 623          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.633e-38
Identity = 77/203 (37.93%), Postives = 119/203 (58.62%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNF-HPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G+L  AC+I++  E+ E     + +    H GYYVLL N+YA +G+WD++  +R +M+EK +   PG S +E+ G+++ F  GD+  HP++ +I    E    K++ +G+ G+   +  D  E  K      HSE LA+A+G++ T PG  I + KNL  C  CH   K IS++  R++ VRD   FHHF++G CSC D  YW
Sbjct:  422 GALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRD--YW 622          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.633e-38
Identity = 82/199 (41.21%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA---GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            AC +H   +L E A   I + +  H G YVLL N+YA+  +W +V K+R+ M   G+   PG S VEV   VH FL GD  HPQ   I + L+    ++++ G+     + YV +++ E   A ++  HSE +A+AF LI+T    PI V KNL  C  CH  +K +SK+  R+I VRD   FHHFK+G+CSC D  YW
Sbjct:  401 ACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVY--HSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQD--YW 595          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.903e-38
Identity = 85/199 (42.71%), Postives = 115/199 (57.79%), Query Frame = 1
Query:   19 CRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAV-GFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLIN---TAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            C  H+ LELGE+A   + + D      YVL  NLY  +GKW+E A++ +LM E+ L  +  CSW++ KG++H F+ GD  HPQ +EI       YEK+K   GF   +    + +E  + E    HSE LA+AFGLI+    AP  PI V KNL  CP CH   K +S +   +I +RD+  FHHFK+G CSC D  YW
Sbjct:  566 CWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEI-------YEKLKEFDGFMEGDMFQCNMTE--RREQLLDHSERLAIAFGLISVHGNAPA-PIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCND--YW 752          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.032e-37
Identity = 81/203 (39.90%), Postives = 118/203 (58.13%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSW-VEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G+L  ACRIH   E+ E+AA H+FE +   +G Y+LL N+YA++G W  V +VR+L++EKGL   P  SW V+  G++H F  G+  HP   +I   LE   E++  +G+      V  D S+ +K  I   H+E LA+AF L+ T     I + KNL  C  CH  ++  S++  + I +RD   FHHF+ G CSCGD  +W
Sbjct:  457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGD--FW 657          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.348e-37
Identity = 82/202 (40.59%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            GSL    R+   ++  E A   + E D  + G YVLL N+YA +G+W EV  +R  M  KG+   PGCS+VEV+G VH F+ GD    + + I ++L+   ++++  G+   ++ V +D +E  K      HSE LA+AF L+ T PG P+ + KNL  C  CH  +K ISK+  R+I VRD   FHHF+DG+CSC D  +W
Sbjct:  374 GSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRD--FW 573          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 1.761e-37
Identity = 83/201 (41.29%), Postives = 121/201 (60.20%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            SL  + R ++  ELGE+A  ++ +  +   G YVLL N+Y+++ KW+   KVR LM ++G+    G SW+E  G +H F +GD  H + K I  VLEG  +K K+ GF   ++ V MD SE  K E    HSE LA+A+ ++ ++PG  I + KN+  C  CHN +K +SK++ R I +RD   FH F+DG CSC D  YW
Sbjct:  339 SLLSSSRTYKNPELGEIAIQNLSKAKS---GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRD--YW 534          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37
Identity = 81/196 (41.33%), Postives = 115/196 (58.67%), Query Frame = 1
Query:   19 CRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            CR+ + +ELG++AA  + +  + + G Y+L+ NLY+    WD+VA+ R  +  KGL   PG S VE+KG+ H F+S D  HP+ KEI  +L     ++K  G++     + ++  E  K E   GHS+ +A+AFGL+ T PG  I + +NL  C  CH   K IS I  R+I VRD   FH FK GTCSC D  YW
Sbjct:  413 CRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKD--YW 606          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37
Identity = 78/202 (38.61%), Postives = 119/202 (58.91%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNF-HPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +L  AC++HR +E+ E     I E +    G  +L+ NLYA++GKW+ V +++  M++  L  +P  SWVE+  E H F++GD F HP  ++I   LE   +K K +G+      V  D  E +K      HSE LA+AF +     G  I + KNL  C  CH+ +K +S++++R+I  RD++ FHHF+DG+CSCGD  YW
Sbjct:  540 TLLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGD--YW 738          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.003e-37
Identity = 87/206 (42.23%), Postives = 117/206 (56.80%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-----EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            G+L  AC +HR + LG+  A  + ET      Y+VLL N+YAA+GKWD V KVR  MR+ G       S VE +G++H F  GD  HPQ K I   L+   +K++ +G+          V M++ E S +     HSE LA+AFGLI   PG PI V KNL TC  CH   KF+S +   +I +RD   FHHF++G CSC +  +W
Sbjct:  385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSH----HSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKE--FW 584          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PP223_ARATH2.716e-3841.29Putative pentatricopeptide repeat-containing prote... [more]
PP367_ARATH4.633e-3837.93Pentatricopeptide repeat-containing protein At5g06... [more]
PP330_ARATH4.633e-3841.21Pentatricopeptide repeat-containing protein At4g21... [more]
PP378_ARATH7.903e-3842.71Pentatricopeptide repeat-containing protein At5g13... [more]
PP417_ARATH1.032e-3739.90Pentatricopeptide repeat-containing protein At5g44... [more]
PP295_ARATH1.348e-3740.59Pentatricopeptide repeat-containing protein At3g62... [more]
PP428_ARATH1.761e-3741.29Pentatricopeptide repeat-containing protein At5g50... [more]
PPR68_ARATH3.003e-3741.33Pentatricopeptide repeat-containing protein At1g31... [more]
PP446_ARATH3.003e-3738.61Pentatricopeptide repeat-containing protein At5g65... [more]
PP140_ARATH3.003e-3742.23Pentatricopeptide repeat-containing protein At2g01... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
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