CF832339

Overview
NameCF832339
Unique NameCF832339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length692
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 1.947e-36
Identity = 85/209 (40.67%), Postives = 119/209 (56.94%), Query Frame = 1
Query:    7 LTIACRIHRWLELGELAAGHIFETDTRHV-------GYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG--SEYVSMDKS-EASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            L   C+    +EL E  A +I  T   +        G YVLL  +YA++ +W++V  VR+LM E G+  +PGCS +E+ G  H F +GD  HPQ K+I   L+   ++++++G+    S+   +D + + SK      HSE LA+AFGLIN  P  PI + KNL  C  CH   K ISK+   +I VRD   FHHFKDG+CSC D  YW
Sbjct:  432 LDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLD--YW 638          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.336e-36
Identity = 78/205 (38.05%), Postives = 118/205 (57.56%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQI----KEINSVLEGFYEKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +L  ACR+   LELG + A  ++      +G YV++ N+Y + GK  E A V   +  KGL++ P C+WVEV  + H+FLSGD F        ++I   ++   E++   G++  E ++  D  E  +  +   HSE LA+A+GL+NT    P+ +T+N   C +CH  V+FIS +  R++ VRD   FHHFK+G CSCG  GYW
Sbjct:  499 ALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCG--GYW 701          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.664e-36
Identity = 86/210 (40.95%), Postives = 115/210 (54.76%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF---AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP------IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            GSL  ACRIH  LELG+ AA  I E +  H G  VL+ N+YA   +W++V  +RR+M EK +  + G S ++  G+ H FL GD  H Q  EI + L+    K+K  G+    GS  V +D  E  K ++   HSE LA+ FGL+N            I + KNL  C  CH   K +SK+  R+I VRD   FH +K+G CSC D  YW
Sbjct:  517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGS--VLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD--YW 722          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 9.661e-36
Identity = 83/201 (41.29%), Postives = 111/201 (55.22%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +L  AC IH+  E+ +     I + D      YVLL N++A++ +W +V++VR+ MR+K +  + G SW E KGEVH F  GD    + KEI S L+    +MK  G+   +  V  D  E  K      HSE LAVAF L+    G PI + KNL  C  CH   K+IS I  R+I +RD   FHHF +G CSCGD  YW
Sbjct:  452 TLLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGD--YW 650          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 81/202 (40.10%), Postives = 116/202 (57.43%), Query Frame = 1
Query:    7 LTIACRIH-RWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGL-INTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            L   CR + R  ELG+ AA  +F+ +  +   YVLL N+YAA G+W+++ K R+ M++  +  + G SWV +K  VH F++GD  HP    I   L+    KM+  G+   + +   D  + +K EI   HSE LAVAF L    +  +PI + KNL  C  CH+  K+ISKI  R I +RD+  FHHF+DG CSC D  +W
Sbjct:  796 LGACCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD--FW 995          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 4.794e-35
Identity = 76/204 (37.25%), Postives = 110/204 (53.92%), Query Frame = 1
Query:    1 GSLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEAS---KAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            GSL  +C +H  +E+ E     + +    +  Y +L+ N+Y A G+ D    +R  +R++G+   PG S + V   VH F SGD  HP+ KEI   L    E++++ G+       +  SE     K +  C HSE LAV FGL+ T P  P+ V KNL  C  CH+ +K +SK+  R+I +RD   FH FK G+CSC D  YW
Sbjct:  422 GSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD--YW 623          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.108e-34
Identity = 75/198 (37.88%), Postives = 108/198 (54.55%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA--GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            +C+IHR LELGE+A   + + +  + G YVL+ ++Y+A+      A +R+L+R   L   PG SW+E+  +VH F+  D  HP+   I S L     +    G+    S   +   S+         HSE LA+A+GL+ T  G  + +TKNL  C  CH+  K++SK   R+I VRD   FHHF DG CSC D  YW
Sbjct:  386 SCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCND--YW 581          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.436e-33
Identity = 82/204 (40.20%), Postives = 112/204 (54.90%), Query Frame = 1
Query:    4 SLTIACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLI---NTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            SL  A  I+  +E+ E+A+  I E    + G +VLL N+YAA G+W +V +VR  M  K +   PG S++E KG +H F + D  H Q +EI   ++    K++  G+ A +  V  D  E  K    C HSE LAVA+GL+         P+ V  NL  C  CH   K ISKI +R+I VRD   FH FKDG+CSC D  +W
Sbjct:  380 SLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRD--FW 581          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.227e-32
Identity = 72/186 (38.71%), Postives = 104/186 (55.91%), Query Frame = 1
Query:   40 ELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGM-PIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 591
            E    +A  I + + +    YVL+ N+YA + +W  VA +R+ M+E G+  +PG SW+E +G+VH F  G + HP +K IN +LE    K    G+      V +D  +  K +    HSE LA+A+GL+        I + KNL  C  CH+ +K IS IV+RD+ +RD   FHHF  G CSCGD
Sbjct:  635 EFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820          
BLAST of CF832339 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.444e-31
Identity = 79/197 (40.10%), Postives = 108/197 (54.82%), Query Frame = 1
Query:   16 ACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 603
            AC++HR  +LG   A  +   +  + G++V+L N+YA SGK DEV+ +R  M    L    G S +EV+ + + F  GD  H +  EI   LE    + K +G+A  SE V     E  K      HSE LAVAFGL+ T   + I + KNL  C  CH+  K+IS +  R I VRD   FHHF++G+CSC D  YW
Sbjct:  390 ACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTV-DVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLD--YW 583          
The following BLAST results are available for this feature:
BLAST of CF832339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
PPR85_ARATH1.947e-3640.67Pentatricopeptide repeat-containing protein At1g59... [more]
PP427_ARATH4.336e-3638.05Pentatricopeptide repeat-containing protein At5g50... [more]
PP311_ARATH5.664e-3640.95Pentatricopeptide repeat-containing protein At4g14... [more]
PP198_ARATH9.661e-3641.29Pentatricopeptide repeat-containing protein At2g41... [more]
PP373_ARATH1.648e-3540.10Putative pentatricopeptide repeat-containing prote... [more]
PP386_ARATH4.794e-3537.25Pentatricopeptide repeat-containing protein At5g15... [more]
PP284_ARATH3.108e-3437.88Pentatricopeptide repeat-containing protein At3g56... [more]
PPR71_ARATH3.436e-3340.20Pentatricopeptide repeat-containing protein At1g34... [more]
PP377_ARATH2.227e-3238.71Putative pentatricopeptide repeat-containing prote... [more]
PP182_ARATH1.444e-3140.10Pentatricopeptide repeat-containing protein At2g33... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L08_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832339 ID=CF832339; Name=CF832339; organism=Citrus sinensis; type=EST; length=692bp
GGGAGCCTTACCATTGCATGCAGGATTCATCGATGGCTTGAGCTTGGGGA
ACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTATT
ACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGTT
GCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCGG
GTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGTG
ACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATTT
TATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCAT
GGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAGA
TGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTATT
TGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCAA
GTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAAC
ATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTAC
TGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTCT
ATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTG
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