CF832422

Overview
NameCF832422
Unique NameCF832422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:290..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.161e-32
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            EINCP+D +ILDAAEE G+DLPYSCRAGACS+C GK++SGTVDQS+QSFLDD+QI EGFVLTC AYPTS+ TI TH+EE L
Sbjct:   18 EINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 1.161e-32
Identity = 61/81 (75.31%), Postives = 73/81 (90.12%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:   67 EVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.517e-32
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = -3
Query:  260 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 508
            E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.517e-32
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = -3
Query:  260 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 508
            E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.517e-32
Identity = 65/80 (81.25%), Postives = 71/80 (88.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I   DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEEEL
Sbjct:   19 IEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.981e-32
Identity = 62/79 (78.48%), Postives = 73/79 (92.41%), Query Frame = -3
Query:  266 NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 502
            +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:   66 DCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.981e-32
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = -3
Query:  260 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 508
            E NCPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   15 EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.587e-32
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I CPDD FILDAAEE G++LPYSCRAGACS+C GKV+SGT+DQSEQSFLDDDQ+G GF+LTC AYPTSD  ++TH E++L
Sbjct:   18 IKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.379e-32
Identity = 62/81 (76.54%), Postives = 72/81 (88.89%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   65 EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_ANAVT (Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petF1 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 3.379e-32
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I+ PDD +ILDAAEE G DLP+SCRAGACS+C GK+VSGTVDQS+QSFLDDDQI  G+VLTC AYPTSDVTI+THKEE+L
Sbjct:   19 IDVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVTIQTHKEEDL 98          
The following BLAST results are available for this feature:
BLAST of CF832422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER1_CYACA1.161e-3277.78Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER1_ARATH1.161e-3275.31Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER_DATME1.517e-3275.90Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN1.517e-3275.90Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_CHLFR1.517e-3281.25Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER_SILPR1.981e-3278.48Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER1_HYONI1.981e-3275.90Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_BUMFI2.587e-3275.00Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]
FER1_SPIOL3.379e-3276.54Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_ANAVT3.379e-3278.75Ferredoxin-1 OS=Anabaena variabilis (strain ATCC 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832422 ID=CF832422; Name=CF832422; organism=Citrus sinensis; type=EST; length=510bp
GGGAGTGCGGACCCCCTTTTTTTTTTTTTTTTATAGAACGGTACCATGTT
CGGATGGGATGANAAACCTCTCCCTCTAGGTACGATGCGCATTCATGGCC
GGGGCAATTACTACAANCTTCTTTGCAACAAGAAATAAAAACACATTACA
AGAATCATTCTCAAATTACTCAATATCCCTTTCAAAGCATTAAAATAATC
AGACAAAACACAACACATAAAAGAGAAGATAATAATGAGATATCAAGAGC
ACATTATTAACCAGCGAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACAT
CACTTGTTGGATAAGCAGCACAAGTGAGAACAAAACCTTCTCCAATTTGA
TCATCATCCAGAAAGCTTTGCTCCGACTGGTCAACGGTTCCAGACACAAC
TTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGGAAGAT
CAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACAG
TTGATTTCTT
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