CF832422

Overview
NameCF832422
Unique NameCF832422
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length510
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:290..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.469e-27
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E + PDD +ILDAAEEAG+DLPYSCRAGACS+C GK+  G VDQS+ SFL+D    +G+VLTC AYP SD+ I THKEEEL
Sbjct:   17 EFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.919e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   18 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.919e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   18 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.919e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = -3
Query:  266 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 505
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   18 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.522e-27
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E + PDD++ILDAAE AG++LPYSCRAGACS+C GK+ SG+VDQS+ SFLDD Q  EG+VLTC +YP SD  I THKE +L
Sbjct:   71 EFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 9.522e-27
Identity = 54/81 (66.67%), Postives = 64/81 (79.01%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E    DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP SD  I THKE EL
Sbjct:   74 EFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.624e-26
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = -3
Query:  266 CPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 499
            C D+ + LDAAE AG+DLPYSCRAGACSSC G + +G VDQS+QSFLDD QI +GFVLTC AYP SD  I TH+EE +
Sbjct:   68 CSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.121e-26
Identity = 53/81 (65.43%), Postives = 67/81 (82.72%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            EI   + +++LD+AE+ G+DLPYSCRAGACS+C G V  GTVDQS+QSFLDDDQ+ + FVLTC AYPTSD  I+TH+EE+L
Sbjct:   16 EIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.063e-25
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = -3
Query:  266 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 508
            E   PDD++IL+AAE AG++LP+SCRAG+CS+C G++ +G VDQSE SFLDD Q+ EG++LTC +YP +D  I THKEE+L
Sbjct:   74 EFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CF832422 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.867e-23
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = -3
Query:  266 DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 493
            DD  ILDA EEAGLDLP SCRAG+CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:   23 DDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
The following BLAST results are available for this feature:
BLAST of CF832422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER1_RAPSA1.469e-2767.90Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_THEVL1.919e-2770.00Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB1.919e-2770.00Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN1.919e-2770.00Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER3_MAIZE9.522e-2766.67Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER3_ARATH9.522e-2766.67Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER_PHYPA1.624e-2667.95Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER_RHOPL2.121e-2665.43Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER6_MAIZE3.063e-2560.49Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER2_APHSA2.867e-2364.94Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832422 ID=CF832422; Name=CF832422; organism=Citrus sinensis; type=EST; length=510bp
GGGAGTGCGGACCCCCTTTTTTTTTTTTTTTTATAGAACGGTACCATGTT
CGGATGGGATGANAAACCTCTCCCTCTAGGTACGATGCGCATTCATGGCC
GGGGCAATTACTACAANCTTCTTTGCAACAAGAAATAAAAACACATTACA
AGAATCATTCTCAAATTACTCAATATCCCTTTCAAAGCATTAAAATAATC
AGACAAAACACAACACATAAAAGAGAAGATAATAATGAGATATCAAGAGC
ACATTATTAACCAGCGAGCTCCTCTTCCTTGTGAGTCTCTATAGTAACAT
CACTTGTTGGATAAGCAGCACAAGTGAGAACAAAACCTTCTCCAATTTGA
TCATCATCCAGAAAGCTTTGCTCCGACTGGTCAACGGTTCCAGACACAAC
TTTCCCAGTACAGGAAGAGCAAGCCCCAGCCCTGCATGAGTACGGAAGAT
CAAGCCCAGCTTCTTCAGCAGCATCAAGAATAAACGAGTCATCAGGACAG
TTGATTTCTT
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