CF832423

Overview
NameCF832423
Unique NameCF832423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:289..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_CHLRE (Ferredoxin, chloroplastic OS=Chlamydomonas reinhardtii GN=PETF PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32
Identity = 64/80 (80.00%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I CP D++ILDAAEEAGLDLPYSCRAGACSSC GKV +GTVDQS+QSFLDD Q+G GFVLTC AYPTSD TI+TH+EE L
Sbjct:   46 IECPADTYILDAAEEAGLDLPYSCRAGACSSCAGKVAAGTVDQSDQSFLDDAQMGNGFVLTCVAYPTSDCTIQTHQEEAL 125          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_CHLFR (Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            + I   DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SGTVDQS+QSFLDDDQI  G+VLTC AYPTSD TIETHKEEEL
Sbjct:   17 QTIEVDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEEEL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_CYACA (Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 1.088e-32
Identity = 63/81 (77.78%), Postives = 73/81 (90.12%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            EINCP+D +ILDAAEE G+DLPYSCRAGACS+C GK++SGTVDQS+QSFLDD+QI EGFVLTC AYPTS+ TI TH+EE L
Sbjct:   18 EINCPNDQYILDAAEEQGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDEQIKEGFVLTCVAYPTSNCTILTHQEEAL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_DATME (Ferredoxin OS=Datura metel PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.421e-32
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_DATIN (Ferredoxin OS=Datura inoxia PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.421e-32
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E +CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +GTVDQS+ ++LDDDQ+ EGFVLTC AYP SDVTIETHKEEEL G
Sbjct:   15 EFDCPDDVYILDRAEEEGHDLPYSCRAGSCSSCAGKVTAGTVDQSDGNYLDDDQMAEGFVLTCVAYPQSDVTIETHKEEELTG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32
Identity = 62/79 (78.48%), Postives = 73/79 (92.41%), Query Frame = 1
Query:   10 NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:   66 DCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_CHLFU (Ferredoxin OS=Chlorella fusca PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E I CP+D++ILDAAEEAGLDLPYSCRAGACSSC GKV SG VDQS+QSFLDD Q+G+GFVLTC AYPTSDVTI TH+E  L
Sbjct:   12 ETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAAL 93          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_HYONI (Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.856e-32
Identity = 63/83 (75.90%), Postives = 71/83 (85.54%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E NCPDD +ILD AEE G +LPYSCRAG+CSSC GKV +GTVDQS+ +FLDDDQI +GFVLTC AYP SDVTIETHKEE+L G
Sbjct:   15 EFNCPDDVYILDQAEEEGHELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQIADGFVLTCVAYPQSDVTIETHKEEDLTG 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SPIMA (Ferredoxin OS=Spirulina maxima PE=1 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 2.424e-32
Identity = 62/82 (75.61%), Postives = 73/82 (89.02%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E I+C DD++ILDAAEEAGLDLPYSCRAGACS+C GK+ SG++DQS+QSFLDDDQI  G+VLTC AYPTSD TI+TH+EE L
Sbjct:   17 ETIDCDDDTYILDAAEEAGLDLPYSCRAGACSTCAGKITSGSIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIQTHQEEGL 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_BUMFI (Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.424e-32
Identity = 60/80 (75.00%), Postives = 71/80 (88.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I CPDD FILDAAEE G++LPYSCRAGACS+C GKV+SGT+DQSEQSFLDDDQ+G GF+LTC AYPTSD  ++TH E++L
Sbjct:   18 IKCPDDQFILDAAEEQGIELPYSCRAGACSTCAGKVLSGTIDQSEQSFLDDDQMGAGFLLTCVAYPTSDCKVQTHAEDDL 97          
The following BLAST results are available for this feature:
BLAST of CF832423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER_CHLRE1.088e-3280.00Ferredoxin, chloroplastic OS=Chlamydomonas reinhar... [more]
FER_CHLFR1.088e-3279.27Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2[more]
FER1_CYACA1.088e-3277.78Ferredoxin OS=Cyanidium caldarium GN=petF PE=3 SV=... [more]
FER_DATME1.421e-3275.90Ferredoxin OS=Datura metel PE=1 SV=1[more]
FER_DATIN1.421e-3275.90Ferredoxin OS=Datura inoxia PE=1 SV=1[more]
FER_SILPR1.856e-3278.48Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER_CHLFU1.856e-3279.27Ferredoxin OS=Chlorella fusca PE=1 SV=1[more]
FER1_HYONI1.856e-3275.90Ferredoxin-1 OS=Hyoscyamus niger PE=1 SV=1[more]
FER_SPIMA2.424e-3275.61Ferredoxin OS=Spirulina maxima PE=1 SV=2[more]
FER_BUMFI2.424e-3275.00Ferredoxin OS=Bumilleriopsis filiformis PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832423 ID=CF832423; Name=CF832423; organism=Citrus sinensis; type=EST; length=494bp
GAAGAAATCAACTGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGA
AGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCT
GTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT
CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTA
TCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTG
GTTAATAATGTGCTCTTGATAACACATTATTATCTTCTCTTTTATGTGTT
GTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTG
AGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTG
TAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTTTCTC
ATCCCATCCGAACATGGTACCGTTCTATAAAAAAAAAAAAAAAA
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