CF832423

Overview
NameCF832423
Unique NameCF832423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:289..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER2_CYACA (Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.330e-30
Identity = 58/80 (72.50%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            INCP D +ILDAAEE G+DLPYSCRAGACS+C GK+V G+VDQS+QSFLD++QI  GF+LTC AYPTSD  I+TH+EE L
Sbjct:   17 INCPGDQYILDAAEEQGVDLPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEEQINNGFILTCVAYPTSDCVIQTHQEEAL 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 59/83 (71.08%), Postives = 69/83 (83.13%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:   62 EFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FERA_ALOMA (Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 59/82 (71.95%), Postives = 70/82 (85.37%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            +E +CPDD +ILD AEE G+DLPYSCRAG+CSSC GKV  G VDQS+ SFLDD+Q+ +G+VLTC A+PTSDV IETHKEEEL
Sbjct:   14 QEFDCPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVKQGEVDQSDGSFLDDEQMEQGWVLTCVAFPTSDVVIETHKEEEL 95          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_ORYSJ (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. japonica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   58 ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_ORYSI (Ferredoxin-1, chloroplastic OS=Oryza sativa subsp. indica GN=ADI1 PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.269e-30
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG +DQS+QSFLDDDQ+  G+VLTC AYP SDV IETHKE++L
Sbjct:   58 ELQVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKVVSGEIDQSDQSFLDDDQVAAGWVLTCHAYPKSDVVIETHKEDDL 138          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_MARPO (Ferredoxin OS=Marchantia polymorpha PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 60/80 (75.00%), Postives = 70/80 (87.50%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+  DD +ILDAAEEAGL LPYSCRAGACSSC GKV +G VDQS++SFLDDDQ+ EG+VLTC AYPTSD+TI+TH+EE L
Sbjct:   15 IDVEDDEYILDAAEEAGLSLPYSCRAGACSSCAGKVTAGEVDQSDESFLDDDQMDEGYVLTCIAYPTSDLTIDTHQEEAL 94          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_EUGVI (Ferredoxin OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 59/80 (73.75%), Postives = 69/80 (86.25%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I C +D +ILDAAE+AG+DLPYSCRAGACSSCTG V  GTVDQS+QSFLDDDQ+ +GF LTC  YPTS+ TIETHKE++L
Sbjct:   16 IECGEDQYILDAAEDAGIDLPYSCRAGACSSCTGIVKEGTVDQSDQSFLDDDQMAKGFCLTCTTYPTSNCTIETHKEDDL 95          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_BRYMA (Ferredoxin OS=Bryopsis maxima PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 2.964e-30
Identity = 57/82 (69.51%), Postives = 71/82 (86.59%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 252
            I+C +DSFILD AEE G+D+P+SCR+G+CS+C GK+  GTVDQSEQ+FLDDDQ+ EG+VLTC AYPTSD TI TH+EEE+ G
Sbjct:   17 IDCDEDSFILDVAEEEGIDIPFSCRSGSCSTCAGKIEGGTVDQSEQTFLDDDQMEEGYVLTCVAYPTSDCTILTHQEEEMIG 98          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_WHEAT (Ferredoxin, chloroplastic OS=Triticum aestivum GN=PETF PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 3.871e-30
Identity = 59/81 (72.84%), Postives = 69/81 (85.19%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GK+VSG +DQS+QSFLDDDQ+  G+VLTC AYP SD+ IETHKEEEL
Sbjct:   61 ELEVPDDVYILDQAEEEGIDLPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEAGWVLTCHAYPKSDIVIETHKEEEL 141          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_SYNP2 (Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petF PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 5.055e-30
Identity = 61/79 (77.22%), Postives = 69/79 (87.34%), Query Frame = 1
Query:   10 NCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            + PDD +ILD+A +AG DLP SCRAGACS+C GK+VSGTVDQSEQSFLDDDQI  G+VLTC AYP SDVTIET+KEEEL
Sbjct:   18 DAPDDEYILDSAGDAGYDLPASCRAGACSTCAGKIVSGTVDQSEQSFLDDDQIEAGYVLTCIAYPQSDVTIETNKEEEL 96          
The following BLAST results are available for this feature:
BLAST of CF832423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER2_CYACA1.330e-3072.50Ferredoxin OS=Cyanidium caldarium GN=PETF PE=1 SV=... [more]
FER_CAPAN2.269e-3071.08Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FERA_ALOMA2.269e-3071.95Ferredoxin-A OS=Alocasia macrorrhiza PE=1 SV=1[more]
FER1_ORYSJ2.269e-3072.84Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER1_ORYSI2.269e-3072.84Ferredoxin-1, chloroplastic OS=Oryza sativa subsp.... [more]
FER_MARPO2.964e-3075.00Ferredoxin OS=Marchantia polymorpha PE=1 SV=1[more]
FER_EUGVI2.964e-3073.75Ferredoxin OS=Euglena viridis PE=1 SV=1[more]
FER_BRYMA2.964e-3069.51Ferredoxin OS=Bryopsis maxima PE=1 SV=1[more]
FER_WHEAT3.871e-3072.84Ferredoxin, chloroplastic OS=Triticum aestivum GN=... [more]
FER1_SYNP25.055e-3077.22Ferredoxin-1 OS=Synechococcus sp. (strain ATCC 272... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832423 ID=CF832423; Name=CF832423; organism=Citrus sinensis; type=EST; length=494bp
GAAGAAATCAACTGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGA
AGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCT
GTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT
CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTA
TCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTG
GTTAATAATGTGCTCTTGATAACACATTATTATCTTCTCTTTTATGTGTT
GTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTG
AGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTG
TAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTTTCTC
ATCCCATCCGAACATGGTACCGTTCTATAAAAAAAAAAAAAAAA
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