CF832423

Overview
NameCF832423
Unique NameCF832423
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length494
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1721 contig Csv1_Contig1721:289..782. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER1_RAPSA (Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.377e-27
Identity = 55/81 (67.90%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E + PDD +ILDAAEEAG+DLPYSCRAGACS+C GK+  G VDQS+ SFL+D    +G+VLTC AYP SD+ I THKEEEL
Sbjct:   17 EFDVPDDQYILDAAEEAGVDLPYSCRAGACSTCAGKIEKGQVDQSDGSFLEDHHFEKGYVLTCVAYPQSDLVIHTHKEEEL 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_THEVL (Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=petF1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.798e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   18 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_THEEB (Ferredoxin-1 OS=Thermosynechococcus elongatus (strain BP-1) GN=petF1 PE=1 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.798e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   18 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_SYNEN (Ferredoxin-1 OS=Synechococcus elongatus naegeli GN=petF1 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.798e-27
Identity = 56/80 (70.00%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    7 INCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            I+ P+D +ILD AEE GLDLP+SCRAGACS+C GK++ G VDQS+QSFLDDDQI +GFVLTC AYP SD  I T++EEEL
Sbjct:   18 IDVPEDEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 97          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_RHOPL (Ferredoxin OS=Rhodymenia palmata PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.231e-27
Identity = 54/82 (65.85%), Postives = 68/82 (82.93%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            EEI   + +++LD+AE+ G+DLPYSCRAGACS+C G V  GTVDQS+QSFLDDDQ+ + FVLTC AYPTSD  I+TH+EE+L
Sbjct:   15 EEIEGDETTYVLDSAEDQGIDLPYSCRAGACSTCAGIVELGTVDQSDQSFLDDDQLNDSFVLTCVAYPTSDCQIKTHQEEKL 96          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER3_ARATH (Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.231e-27
Identity = 54/82 (65.85%), Postives = 65/82 (79.27%), Query Frame = 1
Query:    1 EEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            +E    DD +ILDAAEEAG+DLPYSCRAGACS+C G++VSG VDQS+ SFL+D  + +G+VLTC AYP SD  I THKE EL
Sbjct:   73 DEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER3_MAIZE (Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 8.923e-27
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E + PDD++ILDAAE AG++LPYSCRAGACS+C GK+ SG+VDQS+ SFLDD Q  EG+VLTC +YP SD  I THKE +L
Sbjct:   71 EFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFLDDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER_PHYPA (Ferredoxin, chloroplastic OS=Physcomitrella patens GN=PETF PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.522e-26
Identity = 53/78 (67.95%), Postives = 62/78 (79.49%), Query Frame = 1
Query:   13 CPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            C D+ + LDAAE AG+DLPYSCRAGACSSC G + +G VDQS+QSFLDD QI +GFVLTC AYP SD  I TH+EE +
Sbjct:   68 CSDEEYXLDAAERAGMDLPYSCRAGACSSCAGIIKAGEVDQSDQSFLDDSQIDDGFVLTCVAYPASDCIIXTHQEENM 145          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER6_MAIZE (Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.871e-25
Identity = 49/81 (60.49%), Postives = 66/81 (81.48%), Query Frame = 1
Query:    4 EINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            E   PDD++IL+AAE AG++LP+SCRAG+CS+C G++ +G VDQSE SFLDD Q+ EG++LTC +YP +D  I THKEE+L
Sbjct:   74 EFEAPDDTYILEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKADCVIHTHKEEDL 154          
BLAST of CF832423 vs. ExPASy Swiss-Prot
Match: FER2_APHSA (Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 2.687e-23
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 1
Query:   19 DDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTV-DQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 246
            DD  ILDA EEAGLDLP SCRAG+CS+C GK+VSG   +Q +Q+FLDDDQ+  G+V+TC AYPT D TI TH+E E+
Sbjct:   23 DDQTILDAGEEAGLDLPSSCRAGSCSTCAGKLVSGAAPNQDDQAFLDDDQLAAGWVMTCVAYPTGDCTIMTHQESEV 99          
The following BLAST results are available for this feature:
BLAST of CF832423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
FER1_RAPSA1.377e-2767.90Ferredoxin, root R-B1 OS=Raphanus sativus PE=1 SV=... [more]
FER_THEVL1.798e-2770.00Ferredoxin-1 OS=Thermosynechococcus vulcanus GN=pe... [more]
FER_THEEB1.798e-2770.00Ferredoxin-1 OS=Thermosynechococcus elongatus (str... [more]
FER_SYNEN1.798e-2770.00Ferredoxin-1 OS=Synechococcus elongatus naegeli GN... [more]
FER_RHOPL5.231e-2765.85Ferredoxin OS=Rhodymenia palmata PE=1 SV=1[more]
FER3_ARATH5.231e-2765.85Ferredoxin-3, chloroplastic OS=Arabidopsis thalian... [more]
FER3_MAIZE8.923e-2766.67Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE... [more]
FER_PHYPA1.522e-2667.95Ferredoxin, chloroplastic OS=Physcomitrella patens... [more]
FER6_MAIZE2.871e-2560.49Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE... [more]
FER2_APHSA2.687e-2364.94Ferredoxin-2 OS=Aphanothece sacrum PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N12_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832423 ID=CF832423; Name=CF832423; organism=Citrus sinensis; type=EST; length=494bp
GAAGAAATCAACTGTCCTGATGACTCGTTTATTCTTGATGCTGCTGAAGA
AGCTGGGCTTGATCTTCCGTACTCATGCAGGGCTGGGGCTTGCTCTTCCT
GTACTGGGAAAGTTGTGTCTGGAACCGTTGACCAGTCGGAGCAAAGCTTT
CTGGATGATGATCAAATTGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTA
TCCAACAAGTGATGTTACTATAGAGACTCACAAGGAAGAGGAGCTCGCTG
GTTAATAATGTGCTCTTGATAACACATTATTATCTTCTCTTTTATGTGTT
GTGTTTTGTCTGATTATTTTAATGCTTTGAAAGGGATATTGAGTAATTTG
AGAATGATTCTTGTAATGTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTG
TAATTGCACCGGCCATGAATGCGCATCGTACCTAGAGGGTGAGGTTTCTC
ATCCCATCCGAACATGGTACCGTTCTATAAAAAAAAAAAAAAAA
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