CF832432

Overview
NameCF832432
Unique NameCF832432
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832432_ssr165 microsatellite CF832432_ssr165:165..174. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF832432 vs. ExPASy Swiss-Prot
Match: OTU1_SCHPO (Putative ubiquitin thioesterase otu1 OS=Schizosaccharomyces pombe GN=otu1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.394e-35
Identity = 83/205 (40.49%), Postives = 116/205 (56.59%), Query Frame = -1
Query:  223 GIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEY 837
            G I  RV+P DNSCLF A+   +        ELR+++A  V S+P  YS A LGK + EY SWI+    WGG IELSIL+ ++G EI + D++T R D Y  +    +R  ++Y G+HYD  A++       + D  +F      TI P       L+K       YTDTA+F++RC +C  G++G+K+A  HA ATGH  F EY
Sbjct:  133 GDIALRVMPDDNSCLFRALSKPLGFSPY---ELREIVANQVLSNPDIYSTAILGKPSIEYASWIRKETSWGGYIELSILSSHFGVEICSVDVKTGRVDSYNPQPATGQRTYIVYSGIHYDLAALAAVLW-DTDVDVVLFDA-SDVTITPYVQQLASLLKNMH---YYTDTASFSIRCTICGTGLVGEKDATAHALATGHTQFGEY 329          
BLAST of CF832432 vs. ExPASy Swiss-Prot
Match: OTU1_YEAST (Ubiquitin thioesterase OTU1 OS=Saccharomyces cerevisiae GN=OTU1 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 9.058e-27
Identity = 61/207 (29.47%), Postives = 116/207 (56.04%), Query Frame = -1
Query:  220 EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQEKKYSERVMLIYDGLHYDALAISPFEGAPEEFDQTIFPVQKGRTIGPAEDLALKLVKEQQRKKTYTDTANFTLRCGVCQIGVIGQKEAVEHAQATGHVNFQEYR 840
            E ++    +  DNSCLF+A+ Y +   ++   +LR++++  V ++PVK+++A L K N++Y  WI   E WGGAIE+ I++D     I   DI   + + +  E K+   ++++++G+HYD+L ++ F        +T+F   +  +       AL+L    ++     +T    ++C  CQ+  +G++E   HA++TGHV+F + R
Sbjct:  106 ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKF-NEDKFDNYILILFNGIHYDSLTMNEF--------KTVFNKNQPES-DDVLTAALQLASNLKQTGYSFNTHKAQIKCNTCQMTFVGEREVARHAESTGHVDFGQNR 301          
The following BLAST results are available for this feature:
BLAST of CF832432 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
OTU1_SCHPO1.394e-3540.49Putative ubiquitin thioesterase otu1 OS=Schizosacc... [more]
OTU1_YEAST9.058e-2729.47Ubiquitin thioesterase OTU1 OS=Saccharomyces cerev... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N17_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832432 ID=CF832432; Name=CF832432; organism=Citrus sinensis; type=EST; length=861bp
TTTTTTTTTTTTTTTTTGATATTTGATAATATCCCATTTCATAATACTAT
TATTTCAGTGAATCTTTTGATTTGTCACAGCTCAAAACATTCCATCACAA
CATTTATCTATGAAATCATAACAATTTTATTGGTTCTCTGAGAAGTCAAC
GAACTCTAGCTCAAAGAGAGAGAGCTAACTGATAAAATGGATTACTTTTG
CTACACGGTTACCATATCATCTATATTCCTGAAAATTGACATGGCCAGTC
GCTTGAGCATGCTCAACAGCCTCCTTCTGTCCAATTACTCCAATTTGGCA
TACCCCACAGCGCAAAGTGAAGTTGGCCGTGTCGGTATAGGTCTTTTTCC
TTTGCTGCTCCTTGACAAGTTTCAGAGCTAGGTCTTCTGCTGGCCCAATG
GTCCTGCCCTTCTGTACGGGAAATATAGTCTGATCAAACTCCTCTGGAGC
TCCCTCAAATGGAGATATAGCTAAAGCATCATAATGAAGCCCGTCGTAGA
TGAGCATAACTCTTTCAGAATACTTCTTTTCCTGGCCATACAAATCACAT
CTTGTGGTCTGAATATCATATGCTGCAATTTCACGTCCATAATAATCTGC
TAATATCGAAAGCTCAATGGCACCTCCCCACTTCTCTGGGTCCTGAATCC
AAGAACAATACTCTTGATTTGACTTTCCAAGAAATGCCTCAGAATATTTT
ACTGGATCACTTGCTACTGTTGCTGCTATAACCTGTCTCAATTCAGGAGC
TTTGTTTTTGTCATGTTCCATAACATACCCGACAGCATTAAATAGGCAAC
TGTTGTCTGAGGGAATAACCCTTCTAACAATAATACCTTCCATCTTATAT
AGCAATACTGA
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