CF832434

Overview
NameCF832434
Unique NameCF832434
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length557
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1033 contig Csv1_Contig1033:43..598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_PYRAE (Type 2 DNA topoisomerase 6 subunit B OS=Pyrobaculum aerophilum GN=top6B PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 2.111e-14
Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 1
Query:  214 KALITETSKGTLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEA 552
            K +I E+   TLL+FL   F  +G+  A+  +   G  FNP   V +LT +++V++    +Q + +  P    L+PAG   L +     L    V   +   + + GHPFIVEA
Sbjct:  238 KQMIQESRGLTLLEFLMENFDAVGEGTAKAFLEWAG--FNPNAKVTALTPEELVKLVDKMKQYEGWRRPRSDWLSPAGAELLEIGAKAILGAEAVFAITRKPESYGGHPFIVEA 349          

HSP 2 Score: 48.9062 bits (115), Expect = 2.111e-14
Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 3
Query:    9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIK 215
            NW   + +I  YL++ A+I PYA+ +FK        ++ +   RRT  +PP P +   HP SVD+  +K
Sbjct:  176 NWLAAKKRIEDYLKRTAIIAPYAEIVFK------GPDLELWLKRRTTKLPPAPKEGLPHPKSVDVDTLK 238          
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_ARCFU (Type 2 DNA topoisomerase 6 subunit B OS=Archaeoglobus fulgidus GN=top6B PE=3 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 4.613e-14
Identity = 32/113 (28.32%), Postives = 58/113 (51.33%), Query Frame = 1
Query:  217 ALITETSKGTLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555
            +++  T   TL +FL+ +FV +G+ +A+ ++ + G  F+     + +      ++   FRQ  F  P   CL+P GE  +   ++ E  P  V   +   +V+ GHPF+VE G
Sbjct:  239 SMLKSTRATTLRRFLKEEFVRVGEKIADDVLRKAG--FSGDETPQEMGRDDAAKLLNAFRQTDFLPPPTDCLSPIGEAMIAKSLMAEFQPEFVYAVTRKPKVYSGHPFLVEVG 349          

HSP 2 Score: 36.1946 bits (82), Expect = 4.613e-14
Identity = 21/61 (34.43%), Postives = 31/61 (50.82%), Query Frame = 3
Query:   24 RSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTI-RFSRRTDVMPPGPVDTKHHPSSVDL 203
            +  +  YLR+ +VI P+A+  F       E + TI  F R TD +P  P   K HP  ++L
Sbjct:  180 KQSVYEYLRETSVINPHAKITF------VEPDGTINEFKRVTDDIPQPPKSIKPHPHGIEL 234          
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULTO (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus tokodaii GN=topB6B PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 1.014e-13
Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 3
Query:    9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIK 215
            +W   + KI  Y+++  +I+PYA+F FK        N  I + R TD +P  P + K HP  VD+ LIK
Sbjct:  178 DWQRAKQKIYEYVKKTYIISPYAEFFFK-----DPDNNVIYYKRLTDKIPEPPKEVKPHPYGVDIELIK 241          

HSP 2 Score: 46.595 bits (109), Expect = 1.014e-13
Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  256 FLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAKFDD---PSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555
            FL ++F +IG   A++++ EM      K   + LT ++I R+ ++ +  KFDD   PS   L+  GE  ++L +    +P      +   + ++GHPFIVEAG
Sbjct:  256 FLINEFQSIGDVTADKIL-EMAKLPKDKKTTE-LTDEEISRLVEVMK--KFDDFRPPSAEALSVIGEDLIKLGLKSIFNPEFAEAITRKPKAYQGHPFIVEAG 354          
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_METS5 (Type 2 DNA topoisomerase 6 subunit B OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=top6B PE=3 SV=1)

HSP 1 Score: 50.8322 bits (120), Expect = 4.871e-13
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 3
Query:    9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYR 230
            +W   +S++  Y+++  +ITPYA+F FK      E NV + + R T+ MP  P + K HP  VD+ L+K    R
Sbjct:  179 DWMRAKSRVYEYIKRTYIITPYAEFYFK----DPEGNVVL-YPRLTNKMPVPPKEVKPHPYGVDIELLKNMISR 247          

HSP 2 Score: 44.669 bits (104), Expect = 4.871e-13
Identity = 29/105 (27.62%), Postives = 51/105 (48.57%), Query Frame = 1
Query:  244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQ-AKFDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555
            T+ +FL  +F ++G+  A  +I   G   +P   V+ LT  Q+ ++    +    F  PS   L+  G   + L + +  +P  V   +   + ++GHPFIVE G
Sbjct:  253 TVKEFLVKEFQSVGEKTALSVIEMAG--LDPDKRVQKLTDDQLSKLVDAMKNFPDFRPPSPEALSTIGADLIELGLKQTFNPEYVGAVTRRPKAYQGHPFIVEVG 355          
The following BLAST results are available for this feature:
BLAST of CF832434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
TOP6B_PYRAE2.111e-1431.58Type 2 DNA topoisomerase 6 subunit B OS=Pyrobaculu... [more]
TOP6B_ARCFU4.613e-1428.32Type 2 DNA topoisomerase 6 subunit B OS=Archaeoglo... [more]
TOP6B_SULTO1.014e-1337.68Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus... [more]
TOP6B_METS54.871e-1336.49Type 2 DNA topoisomerase 6 subunit B OS=Metallosph... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832434 ID=CF832434; Name=CF832434; organism=Citrus sinensis; type=EST; length=557bp
TCCATTGAAATTGGACAACTTACCGTTCTAAGATATTGCATTACCTGCGA
CAAATGGCTGTTATCACTCCTTATGCCCAATTTCTATTTAAATTTGAATC
TGAAGTGGCCGAAAAAAACGTCACTATTAGATTTTCACGGAGAACAGACG
TAATGCCTCCAGGTCCTGTTGACACAAAGCACCACCCCTCTTCTGTAGAT
TTACTTTTAATCAAAGGCACTTATTACAGAAACTTCAAAAGGGACTCTCT
TGCAGTTTCTGCAGCATAAATTTGTAAATATAGGAAAGTCCCTTGCTGAA
CGGTTAATTGGTGAAATGGGTCCTGAATTTAACCCAAAAATGGCTGTCAA
GTCTTTAACTTCTCAGCAAATAGTGCGTATCCATCAGTTGTTTCGTCAAG
CTAAATTTGATGACCCTAGTGGTGGTTGTCTTAATCCTGCAGGGGAATAC
AATCTTCGACTATGTATTATAAAGGAACTTCATCCATACATGGTAGCAAC
CTATTCAGGCAGTGCTCAAGTTTTCGAGGGGCATCCATTCATTGTGGAAG
CTGGTGT
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