CF832434
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_PYRAE (Type 2 DNA topoisomerase 6 subunit B OS=Pyrobaculum aerophilum GN=top6B PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 2.111e-14 Identity = 36/114 (31.58%), Postives = 57/114 (50.00%), Query Frame = 1 Query: 214 KALITETSKGTLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAK-FDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEA 552 K +I E+ TLL+FL F +G+ A+ + G FNP V +LT +++V++ +Q + + P L+PAG L + L V + + + GHPFIVEA Sbjct: 238 KQMIQESRGLTLLEFLMENFDAVGEGTAKAFLEWAG--FNPNAKVTALTPEELVKLVDKMKQYEGWRRPRSDWLSPAGAELLEIGAKAILGAEAVFAITRKPESYGGHPFIVEA 349 HSP 2 Score: 48.9062 bits (115), Expect = 2.111e-14 Identity = 24/69 (34.78%), Postives = 38/69 (55.07%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIK 215 NW + +I YL++ A+I PYA+ +FK ++ + RRT +PP P + HP SVD+ +K Sbjct: 176 NWLAAKKRIEDYLKRTAIIAPYAEIVFK------GPDLELWLKRRTTKLPPAPKEGLPHPKSVDVDTLK 238
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_ARCFU (Type 2 DNA topoisomerase 6 subunit B OS=Archaeoglobus fulgidus GN=top6B PE=3 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 4.613e-14 Identity = 32/113 (28.32%), Postives = 58/113 (51.33%), Query Frame = 1 Query: 217 ALITETSKGTLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAKFDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 +++ T TL +FL+ +FV +G+ +A+ ++ + G F+ + + ++ FRQ F P CL+P GE + ++ E P V + +V+ GHPF+VE G Sbjct: 239 SMLKSTRATTLRRFLKEEFVRVGEKIADDVLRKAG--FSGDETPQEMGRDDAAKLLNAFRQTDFLPPPTDCLSPIGEAMIAKSLMAEFQPEFVYAVTRKPKVYSGHPFLVEVG 349 HSP 2 Score: 36.1946 bits (82), Expect = 4.613e-14 Identity = 21/61 (34.43%), Postives = 31/61 (50.82%), Query Frame = 3 Query: 24 RSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTI-RFSRRTDVMPPGPVDTKHHPSSVDL 203 + + YLR+ +VI P+A+ F E + TI F R TD +P P K HP ++L Sbjct: 180 KQSVYEYLRETSVINPHAKITF------VEPDGTINEFKRVTDDIPQPPKSIKPHPHGIEL 234
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_SULTO (Type 2 DNA topoisomerase 6 subunit B OS=Sulfolobus tokodaii GN=topB6B PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 1.014e-13 Identity = 26/69 (37.68%), Postives = 38/69 (55.07%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIK 215 +W + KI Y+++ +I+PYA+F FK N I + R TD +P P + K HP VD+ LIK Sbjct: 178 DWQRAKQKIYEYVKKTYIISPYAEFFFK-----DPDNNVIYYKRLTDKIPEPPKEVKPHPYGVDIELIK 241 HSP 2 Score: 46.595 bits (109), Expect = 1.014e-13 Identity = 33/103 (32.04%), Postives = 56/103 (54.37%), Query Frame = 1 Query: 256 FLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQAKFDD---PSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 FL ++F +IG A++++ EM K + LT ++I R+ ++ + KFDD PS L+ GE ++L + +P + + ++GHPFIVEAG Sbjct: 256 FLINEFQSIGDVTADKIL-EMAKLPKDKKTTE-LTDEEISRLVEVMK--KFDDFRPPSAEALSVIGEDLIKLGLKSIFNPEFAEAITRKPKAYQGHPFIVEAG 354
BLAST of CF832434 vs. ExPASy Swiss-Prot
Match: TOP6B_METS5 (Type 2 DNA topoisomerase 6 subunit B OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=top6B PE=3 SV=1) HSP 1 Score: 50.8322 bits (120), Expect = 4.871e-13 Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 3 Query: 9 NWTTYRSKILHYLRQMAVITPYAQFLFKFESEVAEKNVTIRFSRRTDVMPPGPVDTKHHPSSVDLLLIKGTYYR 230 +W +S++ Y+++ +ITPYA+F FK E NV + + R T+ MP P + K HP VD+ L+K R Sbjct: 179 DWMRAKSRVYEYIKRTYIITPYAEFYFK----DPEGNVVL-YPRLTNKMPVPPKEVKPHPYGVDIELLKNMISR 247 HSP 2 Score: 44.669 bits (104), Expect = 4.871e-13 Identity = 29/105 (27.62%), Postives = 51/105 (48.57%), Query Frame = 1 Query: 244 TLLQFLQHKFVNIGKSLAERLIGEMGPEFNPKMAVKSLTSQQIVRIHQLFRQ-AKFDDPSGGCLNPAGEYNLRLCIIKELHPYMVATYSGSAQVFEGHPFIVEAG 555 T+ +FL +F ++G+ A +I G +P V+ LT Q+ ++ + F PS L+ G + L + + +P V + + ++GHPFIVE G Sbjct: 253 TVKEFLVKEFQSVGEKTALSVIEMAG--LDPDKRVQKLTDDQLSKLVDAMKNFPDFRPPSPEALSTIGADLIELGLKQTFNPEYVGAVTRRPKAYQGHPFIVEVG 355 The following BLAST results are available for this feature:
BLAST of CF832434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 14
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832434 ID=CF832434; Name=CF832434; organism=Citrus sinensis; type=EST; length=557bpback to top |