CF832446

Overview
NameCF832446
Unique NameCF832446
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length599
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2181 contig Csv1_Contig2181:36..634. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: CYPH_YEAST (Peptidyl-prolyl cis-trans isomerase OS=Saccharomyces cerevisiae GN=CPR1 PE=1 SV=3)

HSP 1 Score: 180.644 bits (457), Expect = 5.062e-45
Identity = 92/150 (61.33%), Postives = 105/150 (70.00%), Query Frame = 2
Query:  149 NKVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVEAEG 598
            ++V FDVE  G+P GR+V  L+   VPKTAENFRALCTGEKG G       Y GS FHR+IP FMLQ            +SIYG KFPDENFK  H  PGLLSMANAGP+TNGSQFFITTV   WLDG+HVVFG+V+   D+V KVE+ G
Sbjct:    2 SQVYFDVEADGQPIGRVVFKLYNDIVPKTAENFRALCTGEKGFG-------YAGSPFHRVIPDFMLQGGDFTAGNGTGGKSIYGGKFPDENFKKHHDRPGLLSMANAGPNTNGSQFFITTVPCPWLDGKHVVFGEVVDGYDIVKKVESLG 144          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPIB_SCHJA (Peptidyl-prolyl cis-trans isomerase B OS=Schistosoma japonicum PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 6.612e-45
Identity = 92/169 (54.44%), Postives = 114/169 (67.46%), Query Frame = 2
Query:   83 ILLATFSIILAKKSDQNLKEITNKVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVE 589
            +LL +   +    S+ N  ++T KV FD+E+  +P GRI++GLFGK VPKT ENF+ L  G     K G+   YKGSTFHR+I SFM+Q             SIYGE+FPDENFKLKH G G LSMANAGP+TNG+QFFITT    WLDG+HVVFGKV+  M VV ++E
Sbjct:   10 LLLVSILFLGFVLSEGNGPKVTEKVFFDIEVDEQPLGRIIIGLFGKTVPKTVENFKQLSIGTTL--KDGRTAAYKGSTFHRVIKSFMIQGGDFTNHDGTGGFSIYGERFPDENFKLKHVGAGWLSMANAGPNTNGAQFFITTTQNPWLDGKHVVFGKVVEGMSVVRQIE 176          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPIC_BOVIN (Peptidyl-prolyl cis-trans isomerase C OS=Bos taurus GN=PPIC PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.128e-44
Identity = 93/151 (61.59%), Postives = 103/151 (68.21%), Query Frame = 2
Query:  143 ITNKVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVEAE 595
            +T KV FDV I  K  GRIV+GLFGK VPKT ENF AL TGEKG G       YKGS FHR+I  FM+Q             SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFIT    +WLDG+HVVFGKVL  M VV+ +E +
Sbjct:   36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDFTRGDGTGGISIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVLDGMTVVHSIELQ 179          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPID_MOUSE (40 kDa peptidyl-prolyl cis-trans isomerase OS=Mus musculus GN=Ppid PE=1 SV=3)

HSP 1 Score: 179.104 bits (453), Expect = 1.473e-44
Identity = 92/147 (62.59%), Postives = 105/147 (71.43%), Query Frame = 2
Query:  152 KVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVE 589
            +V FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKG G + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAGP+TNGSQFFITTV T  LDG+HVVFG+V+  + V   +E
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGSTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARTLE 163          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPIC_HUMAN (Peptidyl-prolyl cis-trans isomerase C OS=Homo sapiens GN=PPIC PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 1.473e-44
Identity = 92/151 (60.93%), Postives = 103/151 (68.21%), Query Frame = 2
Query:  143 ITNKVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVEAE 595
            +T KV FDV I  K  GRIV+GLFGK VPKT ENF AL TGEKG G       YKGS FHR+I  FM+Q             SIYGE FPDENFKLKH G G +SMANAGPDTNGSQFFIT    +WLDG+HVVFGKV+  M VV+ +E +
Sbjct:   36 VTAKVFFDVRIGDKDVGRIVIGLFGKVVPKTVENFVALATGEKGYG-------YKGSKFHRVIKDFMIQGGDITTGDGTGGVSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKVIDGMTVVHSIELQ 179          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPID_RAT (40 kDa peptidyl-prolyl cis-trans isomerase OS=Rattus norvegicus GN=Ppid PE=1 SV=3)

HSP 1 Score: 178.718 bits (452), Expect = 1.924e-44
Identity = 92/147 (62.59%), Postives = 105/147 (71.43%), Query Frame = 2
Query:  152 KVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVE 589
            +V FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKG G + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAGP+TNGSQFFITTV T  LDG+HVVFG+V+  + V   +E
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGTGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDREGLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGQVIKGLGVARMLE 163          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPIA_DROME (Peptidyl-prolyl cis-trans isomerase OS=Drosophila melanogaster GN=Cyp1 PE=1 SV=2)

HSP 1 Score: 178.333 bits (451), Expect = 2.512e-44
Identity = 90/149 (60.40%), Postives = 106/149 (71.14%), Query Frame = 2
Query:  152 KVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVEAEG 598
            +V FD+    +P GRIVM L    VPKTAENFRALCTGEKG G       YKGS FHR+IP+FM Q            +SIYG KFPDENF+LKHTG G+LSMANAG +TNGSQFFI TV T+WLD +HVVFG+V+  +DVV K+E+ G
Sbjct:   68 RVFFDMTADNEPLGRIVMELRSDVVPKTAENFRALCTGEKGFG-------YKGSIFHRVIPNFMCQGGDFTNHNGTGGKSIYGNKFPDENFELKHTGSGILSMANAGANTNGSQFFICTVKTAWLDNKHVVFGEVVEGLDVVKKIESYG 209          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPID_BOVIN (40 kDa peptidyl-prolyl cis-trans isomerase OS=Bos taurus GN=PPID PE=1 SV=6)

HSP 1 Score: 177.948 bits (450), Expect = 3.281e-44
Identity = 93/147 (63.27%), Postives = 105/147 (71.43%), Query Frame = 2
Query:  152 KVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKS-GKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVE 589
            +V FDV+I G+  GRIV+ LF   VPKTAENFRALCTGEKGIG + GKPLH+KG  FHRII  FM+Q            ESIYGEKF DENF  KH   GLLSMANAG +TNGSQFFITTV T  LDG+HVVFG+V+  M V   +E
Sbjct:   17 RVFFDVDIGGERVGRIVLELFADIVPKTAENFRALCTGEKGIGPTTGKPLHFKGCPFHRIIKKFMIQGGDFSNQNGTGGESIYGEKFEDENFHYKHDKEGLLSMANAGSNTNGSQFFITTVPTPHLDGKHVVFGQVIKGMGVAKILE 163          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: PPIA_HEMPU (Peptidyl-prolyl cis-trans isomerase OS=Hemicentrotus pulcherrimus PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.281e-44
Identity = 91/149 (61.07%), Postives = 104/149 (69.80%), Query Frame = 2
Query:  152 KVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVEAEG 598
            +V FD++  G+  GRIVM L    VPKTAENFRALCTGEKG G       YKGSTFHR+IP FM Q            +SIYGEKF DENF LKHT PG+LSMANAG +TNGSQFFI T  TSWLDG+HVVFG V   +D++ KVE+ G
Sbjct:    5 QVFFDLQANGENLGRIVMELRADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPGFMCQGGDFTRHNGTGGKSIYGEKFADENFTLKHTQPGILSMANAGVNTNGSQFFICTAVTSWLDGKHVVFGAVTQGLDIIKKVESYG 146          
BLAST of CF832446 vs. ExPASy Swiss-Prot
Match: CYP6_CAEEL (Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhabditis elegans GN=cyn-6 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.281e-44
Identity = 91/162 (56.17%), Postives = 111/162 (68.52%), Query Frame = 2
Query:  107 ILAKKSDQNLKEITNKVDFDVEIAGKPAGRIVMGLFGKAVPKTAENFRALCTGEKGIGKSGKPLHYKGSTFHRIIPSFMLQXXXXXXXXXXXXESIYGEKFPDENFKLKHTGPGLLSMANAGPDTNGSQFFITTVTTSWLDGRHVVFGKVLSVMDVVYKVEA 592
            ILA  ++     +T+KV FD+EI G+P G+IV+GLFG+ VPKT +NF  L    +G G       Y GS FHR+I +FM+Q             SIYGE+F DENFKL+H GPG LSMANAG DTNGSQFFITT  TSWLDG+HVVFGK+L  MDVV ++EA
Sbjct:   12 ILALSAEARGPRVTDKVFFDMEIGGRPVGKIVIGLFGEVVPKTVKNFVELAQRAEGEG-------YVGSKFHRVIENFMIQGGDFTRGDGTGGRSIYGERFEDENFKLQHYGPGWLSMANAGEDTNGSQFFITTAKTSWLDGKHVVFGKILEGMDVVREIEA 166          
The following BLAST results are available for this feature:
BLAST of CF832446 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 232
Match NameE-valueIdentityDescription
CYPH_YEAST5.062e-4561.33Peptidyl-prolyl cis-trans isomerase OS=Saccharomyc... [more]
PPIB_SCHJA6.612e-4554.44Peptidyl-prolyl cis-trans isomerase B OS=Schistoso... [more]
PPIC_BOVIN1.128e-4461.59Peptidyl-prolyl cis-trans isomerase C OS=Bos tauru... [more]
PPID_MOUSE1.473e-4462.5940 kDa peptidyl-prolyl cis-trans isomerase OS=Mus ... [more]
PPIC_HUMAN1.473e-4460.93Peptidyl-prolyl cis-trans isomerase C OS=Homo sapi... [more]
PPID_RAT1.924e-4462.5940 kDa peptidyl-prolyl cis-trans isomerase OS=Ratt... [more]
PPIA_DROME2.512e-4460.40Peptidyl-prolyl cis-trans isomerase OS=Drosophila ... [more]
PPID_BOVIN3.281e-4463.2740 kDa peptidyl-prolyl cis-trans isomerase OS=Bos ... [more]
PPIA_HEMPU3.281e-4461.07Peptidyl-prolyl cis-trans isomerase OS=Hemicentrot... [more]
CYP6_CAEEL3.281e-4456.17Peptidyl-prolyl cis-trans isomerase 6 OS=Caenorhab... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01N24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832446 ID=CF832446; Name=CF832446; organism=Citrus sinensis; type=EST; length=599bp
GCCGGTGACTGCAGAATGAGAAACAACGAAGTGATATATGGCTTCAACAA
ATTTGCTTCCACTCACGATGCTATGGGCTGTTATCCTGTTGGCCACTTTC
TCTATAATTCTGGCGAAAAAATCGGATCAGAATTTGAAAGAAATCACAAA
CAAAGTTGACTTTGACGTTGAGATTGCCGGAAAACCTGCCGGACGTATTG
TAATGGGTCTCTTTGGAAAGGCAGTCCCTAAAACTGCAGAAAATTTCCGA
GCTTTGTGCACAGGGGAGAAAGGGATTGGCAAGAGTGGGAAGCCACTCCA
CTACAAGGGAAGTACGTTTCATAGGATTATTCCCAGCTTTATGCTTCAAG
GAGGTGATTTCACTCTTGGTGATGGAAGAGGTGGAGAGTCAATTTATGGA
GAGAAGTTCCCTGACGAAAATTTCAAACTGAAGCACACCGGCCCAGGGCT
TTTGTCAATGGCAAATGCTGGGCCAGACACCAATGGTTCACAATTCTTCA
TTACAACTGTGACAACTAGCTGGTTGGATGGCAGGCATGTTGTATTTGGA
AAGGTGCTATCGGTGATGGATGTAGTTTACAAGGTTGAAGCTGAAGGGA
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