CF832457

Overview
NameCF832457
Unique NameCF832457
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8246 contig Csv1_Contig8246:546..1095. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832457 vs. ExPASy Swiss-Prot
Match: CATA3_MAIZE (Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 1.299e-30
Identity = 62/112 (55.36%), Postives = 83/112 (74.11%), Query Frame = -2 
Query:  216 NFMHRDEEVDYFPSRYDPTRHAER-YPIPSDVITGRREKACIEKENNFKQPGERYRSWAPDRQERFLNRWIKALCDPRVTHEVRSIWVSYWSQADRSLGQKLASRLNVRPSI 548
            NFMHRDEEVDY+PSR+ P R A    P+P   + GRREKA I K N+FKQPGERYRSW  DRQ+RF+ R+  +L  P+V+ E+RSIW+   ++ D SLG K+A+RLN++ ++
Sbjct:  385 NFMHRDEEVDYYPSRHAPLRQAAPPTPLPPRPVAGRREKATIRKPNDFKQPGERYRSWDADRQDRFVRRFADSLGHPKVSQELRSIWIDLLAKCDASLGMKIATRLNMKANM 496
The following BLAST results are available for this feature:
BLAST of CF832457 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
CATA3_MAIZE1.299e-3055.36Catalase isozyme 3 OS=Zea mays GN=CAT3 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01O07_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832457 ID=CF832457; Name=CF832457; organism=Citrus sinensis; type=EST; length=549bp
TTTTTTTTTTTTTTTTGAACTTCTAAAACAGACTTTTATTAATTGCAACA
ACAGGAAAAGAGTCACATAACATGCAAGTTTATTTTCTATATTACAATAT
ACAACAGCAAACATAGGATCGAAATTCTTCACATAGCTGCACCCTTGGTG
TTCACTCCTTGCTCACTCTTGGCAAGTCAAAAGCATCCAGTGTTCCAGTT
CAAGTGACACCTTCAAATGCTTGGCCTCACATTGAGACGAGAAGCTAGCT
TCTGACCCAGAGATCTGTCGGCCTGAGACCAGTAAGAGACCCATATGCTG
CGAACCTCATGGGTGACACGTGGGTCACATAAAGCCTTAATCCATCGATT
AAGGAACCTCTCTTGCCTGTCTGGGGCCCAGGATCGGTATCTCTCTCCAG
GCTGCTTGAAGTTGTTTTCCTTCTCAATGCAAGCCTTCTCACGCCTTCCT
GTAATTACATCAGAAGGAATGGGATATCTCTCAGCATGACGAGTAGGATC
ATACCTCGAAGGAAAGTAATCGACCTCCTCATCCCTGTGCATGAAATTC
back to top