CF832532

Overview
NameCF832532
Unique NameCF832532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:26..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_BRUPA (40S ribosomal protein S26 (Fragment) OS=Brugia pahangi PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 3.543e-29
Identity = 58/81 (71.60%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GRNK GRGHV+ IRC+NCG+C PKDKAIK+F+VRNIV  AAVRD+ +A  YD Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTTKRRNHGRNKKGRGHVRPIRCTNCGRCAPKDKAIKKFVVRNIVVAAAVRDISDASAYDSYALPKLYHKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_RAT (40S ribosomal protein S26 OS=Rattus norvegicus GN=Rps26 PE=3 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_PIG (40S ribosomal protein S26 OS=Sus scrofa GN=RPS26 PE=3 SV=4)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_MOUSE (40S ribosomal protein S26 OS=Mus musculus GN=Rps26 PE=2 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_MACFA (40S ribosomal protein S26 OS=Macaca fascicularis GN=RPS26 PE=3 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_HUMAN (40S ribosomal protein S26 OS=Homo sapiens GN=RPS26 PE=1 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_BOVIN (40S ribosomal protein S26 OS=Bos taurus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 126.716 bits (317), Expect = 1.031e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_SHEEP (40S ribosomal protein S26 OS=Ovis aries GN=RPS26 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 1.758e-28
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEAGVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_NEUCR (40S ribosomal protein S26E OS=Neurospora crassa GN=rps-26 PE=3 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 55/80 (68.75%), Postives = 65/80 (81.25%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIH 277
            M  KR N GRNK GRGHVK IRCSNC +C PKDKAIKRF +RN+VE AA+RD+ +A V+  YT+PK+Y K+QYCVSCAIH
Sbjct:    1 MVKKRKNNGRNKKGRGHVKPIRCSNCSRCTPKDKAIKRFTIRNMVESAAIRDISDASVFAEYTVPKMYLKLQYCVSCAIH 80          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_CRICR (40S ribosomal protein S26 OS=Cricetus cricetus GN=RPS26 PE=3 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 2.999e-28
Identity = 56/81 (69.14%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GR K GRGHV+ IRC+NC +C PKDKAIK+F++RNIVE AAVRD+ EA V+D Y LPKLY ++ YCVSCAIHS
Sbjct:    1 MTKKRRNNGRAKKGRGHVQPIRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISEASVFDAYVLPKLYVELHYCVSCAIHS 81          
The following BLAST results are available for this feature:
BLAST of CF832532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26_BRUPA3.543e-2971.6040S ribosomal protein S26 (Fragment) OS=Brugia pah... [more]
RS26_RAT1.031e-2870.3740S ribosomal protein S26 OS=Rattus norvegicus GN=... [more]
RS26_PIG1.031e-2870.3740S ribosomal protein S26 OS=Sus scrofa GN=RPS26 P... [more]
RS26_MOUSE1.031e-2870.3740S ribosomal protein S26 OS=Mus musculus GN=Rps26... [more]
RS26_MACFA1.031e-2870.3740S ribosomal protein S26 OS=Macaca fascicularis G... [more]
RS26_HUMAN1.031e-2870.3740S ribosomal protein S26 OS=Homo sapiens GN=RPS26... [more]
RS26_BOVIN1.031e-2870.3740S ribosomal protein S26 OS=Bos taurus GN=RPS26 P... [more]
RS26_SHEEP1.758e-2870.3740S ribosomal protein S26 OS=Ovis aries GN=RPS26 P... [more]
RS26_NEUCR2.999e-2868.7540S ribosomal protein S26E OS=Neurospora crassa GN... [more]
RS26_CRICR2.999e-2869.1440S ribosomal protein S26 OS=Cricetus cricetus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832532 ID=CF832532; Name=CF832532; organism=Citrus sinensis; type=EST; length=652bp
CAACAAGCAGCCCCTGCGCAACAAAAATAACAAGAAAATGACGTTCAAGC
GGAGCAACGGAGGAAGGAACAAGCACGGCCGTGGCCATGTCAAGTTCATC
CGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATTAAGAG
GTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTTCAGG
AGGCGTGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTAAGATG
CAGTACTGCGTCTCGTGTGCGATCCACTCTCATGTGGTGAGAGTTCGTTC
CCGTACTAACAGGAGGATCCGTGAGCCCCCACAACGCTTCAGGCGCAGGG
ATGATGTGCCAAAGGCTGGTGGTGCTCTTGGTCAAGGCCCACGTGCTGGT
GGTCCAGCTGGAGCTCCAGCTGCTGCTCGTGCTTGAAAGCTTTCTGCTGT
CGGTGCTTCTGGTCCTTTGAGGCTTTTGAGATTTTTATGTGGTGGTATCA
GATATGTGGGTCTGTTTAATTAGAGCACTGCAAACTTTTATGTTAGTTTT
GTGTTTTGTTGTCGTGCATCAGAGAACTGTTTACTGTCACAAGTTTGAAT
CAAAACCCTAGAGAATTTTGATGGAGTGATTGAAGTAAAAAAAAAAAAAA
AA
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