CF832532

Overview
NameCF832532
Unique NameCF832532
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length652
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13761 contig Csv1_Contig13761:26..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26A_SCHPO (40S ribosomal protein S26-A OS=Schizosaccharomyces pombe GN=rps26a PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 6.681e-28
Identity = 54/81 (66.67%), Postives = 65/81 (80.25%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N GRNKHGRGH KF+RC NC +  PKDKAIKR+ +RN+VE AA+RD+ EA VY  Y +PK+Y K+QYCVSCAIH+
Sbjct:    1 MTQKRRNCGRNKHGRGHTKFVRCINCSRAVPKDKAIKRWNIRNMVETAAIRDLSEASVYSEYAIPKIYVKLQYCVSCAIHA 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26L_HUMAN (Putative 40S ribosomal protein S26-like 1 OS=Homo sapiens GN=RPS26P11 PE=5 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.254e-26
Identity = 53/81 (65.43%), Postives = 62/81 (76.54%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            MT KR N    K GRGHV+ IRC+NC +C P DKAIK+F++RNIVE AAVRD+ E  V+D Y LPKLY K+ YCVSCAIHS
Sbjct:    1 MTKKRRNNSHAKKGRGHVQPIRCTNCVRCVPTDKAIKKFVIRNIVEAAAVRDISEVSVFDAYVLPKLYVKLHYCVSCAIHS 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_DICDI (40S ribosomal protein S26 OS=Dictyostelium discoideum GN=rps26 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.104e-25
Identity = 51/84 (60.71%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYD--GYTLPKLYAKMQYCVSCAIHSH 283
            MT KR N GR+KHGRG V +IRC+NC +C PKDKA+KRF +R IVE AAV+D+ +  V++  GY  P+ Y K QYC+SCAIHSH
Sbjct:    1 MTQKRRNHGRSKHGRGSVPYIRCTNCARCVPKDKAVKRFYIRPIVENAAVKDISDQGVFNVKGYKFPRTYVKSQYCISCAIHSH 84          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26B_YEAST (40S ribosomal protein S26-B OS=Saccharomyces cerevisiae GN=RPS26B PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.104e-25
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            M  KR++ GRNK GRGHVK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:    1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26A_YEAST (40S ribosomal protein S26-A OS=Saccharomyces cerevisiae GN=RPS26A PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.104e-25
Identity = 54/81 (66.67%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            M  KR++ GRNK GRGHVK +RC NC K  PKDKAIKR  +RNIVE AAVRD+ EA VY  Y LPK Y K+ YCVSCAIH+
Sbjct:    1 MPKKRASNGRNKKGRGHVKPVRCVNCSKSIPKDKAIKRMAIRNIVEAAAVRDLSEASVYPEYALPKTYNKLHYCVSCAIHA 81          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_OXYNO (40S ribosomal protein S26 OS=Oxytricha nova GN=RPS26 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 3.926e-20
Identity = 44/83 (53.01%), Postives = 58/83 (69.88%), Query Frame = 2
Query:   38 MTFKRSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVY--DGYTLPKLYAKMQYCVSCAIHS 280
            M  KR N GRNK  +GH   +RC+NCG+   KDKAIKRF  RN+V+ ++ RD+QE   Y    +T+PK+Y K+ YCVSCAIH+
Sbjct:    1 MPSKRRNNGRNKKNKGHADTVRCTNCGRVVSKDKAIKRFQQRNMVDASSKRDIQENYAYAQSDFTMPKIYVKLSYCVSCAIHA 83          
BLAST of CF832532 vs. ExPASy Swiss-Prot
Match: RS26_ENCCU (40S ribosomal protein S26 OS=Encephalitozoon cuniculi GN=RPS26 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.492e-16
Identity = 36/77 (46.75%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   50 RSNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVEQAAVRDVQEACVYDGYTLPKLYAKMQYCVSCAIHS 280
            R N GR K  RG    I+C  CG   PKDKAIKRF +++++EQA+  D+++A +YD + +P++  K Q+CVSCA H+
Sbjct:    2 RRNHGRGKKNRGSAGSIQCDKCGSVTPKDKAIKRFRIQSLIEQASFDDLKQATIYDVFEVPRMGYKSQFCVSCACHA 78          
The following BLAST results are available for this feature:
BLAST of CF832532 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
RS26A_SCHPO6.681e-2866.6740S ribosomal protein S26-A OS=Schizosaccharomyces... [more]
RS26L_HUMAN6.254e-2665.43Putative 40S ribosomal protein S26-like 1 OS=Homo ... [more]
RS26_DICDI3.104e-2560.7140S ribosomal protein S26 OS=Dictyostelium discoid... [more]
RS26B_YEAST3.104e-2566.6740S ribosomal protein S26-B OS=Saccharomyces cerev... [more]
RS26A_YEAST3.104e-2566.6740S ribosomal protein S26-A OS=Saccharomyces cerev... [more]
RS26_OXYNO3.926e-2053.0140S ribosomal protein S26 OS=Oxytricha nova GN=RPS... [more]
RS26_ENCCU4.492e-1646.7540S ribosomal protein S26 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832532 ID=CF832532; Name=CF832532; organism=Citrus sinensis; type=EST; length=652bp
CAACAAGCAGCCCCTGCGCAACAAAAATAACAAGAAAATGACGTTCAAGC
GGAGCAACGGAGGAAGGAACAAGCACGGCCGTGGCCATGTCAAGTTCATC
CGCTGCTCTAACTGCGGCAAATGCTGCCCTAAGGACAAGGCGATTAAGAG
GTTTTTGGTGAGGAACATTGTTGAGCAAGCTGCTGTTAGGGATGTTCAGG
AGGCGTGTGTTTATGACGGTTACACTCTTCCTAAGTTATATGCTAAGATG
CAGTACTGCGTCTCGTGTGCGATCCACTCTCATGTGGTGAGAGTTCGTTC
CCGTACTAACAGGAGGATCCGTGAGCCCCCACAACGCTTCAGGCGCAGGG
ATGATGTGCCAAAGGCTGGTGGTGCTCTTGGTCAAGGCCCACGTGCTGGT
GGTCCAGCTGGAGCTCCAGCTGCTGCTCGTGCTTGAAAGCTTTCTGCTGT
CGGTGCTTCTGGTCCTTTGAGGCTTTTGAGATTTTTATGTGGTGGTATCA
GATATGTGGGTCTGTTTAATTAGAGCACTGCAAACTTTTATGTTAGTTTT
GTGTTTTGTTGTCGTGCATCAGAGAACTGTTTACTGTCACAAGTTTGAAT
CAAAACCCTAGAGAATTTTGATGGAGTGATTGAAGTAAAAAAAAAAAAAA
AA
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