CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAES2 (Ribosome-recycling factor OS=Haemophilus somnus (strain 2336) GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYGSP  L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GK+A+RN+RRDA    + L K+K++SED  +    ++QK+TD ++KK+D I
Sbjct:   32 AQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAES1 (Ribosome-recycling factor OS=Haemophilus somnus (strain 129Pt) GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYGSP  L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GK+A+RN+RRDA    + L K+K++SED  +    ++QK+TD ++KK+D I
Sbjct:   32 AQPSLLDGIQVEYYGSPTPLRQLANVVAEDARTLAVTVFDRSLISAVEKAILTSDLGLNPSSAGTTIRVPLPPLTEERRRDLIKIVKGEGEQGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDTFVKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ERWCT (Ribosome-recycling factor OS=Erwinia carotovora subsp. atroseptica GN=frr PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.348e-33
Identity = 68/141 (48.23%), Postives = 102/141 (72.34%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            ++P++LD I VEYYGS   L+ +A +   DS +L I  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+++VRN+RRDA   ++ L K+K +SED  +    D+QKLTD ++KK+D
Sbjct:   32 ASPSILDGIHVEYYGSATPLRQLANVVVEDSRTLAISVFDRSLSPAVEKAIMASDLGLNPSSAGTVIRVPLPPLTEERRKDLIKVVRGEAEQGRISVRNVRRDANDKFKALLKDKAISEDEERRAQDDVQKLTDNFIKKVD 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHESH (Ribosome-recycling factor OS=Shewanella sediminis (strain HAW-EB3) GN=frr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 67/143 (46.85%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYGS   LK +  ++  DS +L +  +D + ++++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++AVRN+RRDA    + L+KEK+ +ED+V+    D+QK TD ++K ID I
Sbjct:   32 AHPSLLDTIKVSYYGSMTPLKQVGNVSIEDSRTLAVNVFDSTMIQAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKSLEKEKECTEDDVRRTEDDVQKFTDAHIKLIDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEHH (Ribosome-recycling factor OS=Shewanella halifaxensis (strain HAW-EB4) GN=frr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 65/143 (45.45%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYGS   LK +A ++  D+ +L +  +D++ + ++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++A+RN+RRDA    ++L+KEK+ +ED+V+    D+QKLTD ++K +D +
Sbjct:   32 AHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLTVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAIRNVRRDANSNVKELEKEKECTEDDVRRSEDDVQKLTDAHIKLVDDV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ROSCS (Ribosome-recycling factor OS=Roseiflexus castenholzii (strain DSM 13941 / HLO8) GN=frr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 67/143 (46.85%), Postives = 104/143 (72.73%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++PA+++ + VE YG+ + L  +A I  P+   L+IQP+D +++K+I KAI++S+LG+TP +DG +IRL +PQLT  RRKEL+K+V  + EE KVA+RNIRR+AL+    L+ EK +SED  +     LQ+LTD Y++++D I
Sbjct:   32 ASPALVEHLHVEAYGATLPLNQLATITVPEPRMLVIQPFDANTVKAISKAIMNSELGITPTDDGRLIRLAIPQLTEARRKELTKLVRARVEESKVALRNIRREALEDLRDLEHEKMISEDEHRRAQEKLQELTDRYVRELDHI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PHOLL (Ribosome-recycling factor OS=Photorhabdus luminescens subsp. laumondii GN=frr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 68/141 (48.23%), Postives = 103/141 (73.05%), Query Frame = -2
Query:  228 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 650
            ++P++LD I VEYYG+P  L+ +A +   D+ +L I  +D++   +IEKAI++SDLG+ P++ G  IR+ LP LT ERRK+L KVV  +AE+G+V+VRNIRRDA    + L K+K++SED+ +    D+QKLTD ++KK+D
Sbjct:   32 ASPSLLDGIIVEYYGAPTPLRQLANVIAEDARTLAITVFDRTMTPAIEKAIMASDLGLNPSSAGTTIRVPLPPLTEERRKDLIKVVRSEAEQGRVSVRNIRRDANDKIKALLKDKEISEDDERRAQDDIQKLTDNFIKKVD 172          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_GEOMG (Ribosome-recycling factor OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=frr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 64/139 (46.04%), Postives = 103/139 (74.10%), Query Frame = -2
Query:  222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638
            +LD I+VEYYG+P  L  +A ++ P+  ++ IQP++   +  IEKAI++++LG TP NDG+ IR++LP LT ERRKE+ K + K AE+ KVAVRNIRRD + + +KL+K+KK+SED++K    ++Q +T+ ++ K++ +
Sbjct:   36 LLDDIKVEYYGNPSPLSQVATLSVPEPRTITIQPWEAKLIPVIEKAIMNANLGFTPANDGKTIRISLPPLTEERRKEIVKTLKKMAEDTKVAVRNIRRDGIDSLKKLEKDKKISEDDLKRAEKEVQDVTNTFVAKVEEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESOH (Ribosome-recycling factor OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=frr PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.067e-33
Identity = 65/142 (45.77%), Postives = 107/142 (75.35%), Query Frame = -2
Query:  216 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 641
            A+LD I V+YYG+P  L  +A ++ P+S  ++IQP+D +++K +EKAI+ +++ +TP+NDG+VIRL++P LT +RRKE++K V + AEE KVA+RNIRRDA +  ++++K+  +SED        +QK+TD Y+++ID ++K
Sbjct:   35 ALLDGIVVDYYGTPTPLNQLASLSVPESRLIVIQPWDATAIKDVEKAILQANIDLTPSNDGKVIRLSIPPLTEDRRKEIAKRVNQMAEEHKVAMRNIRRDANETLKQMKKDGDISEDESFAGKDKVQKVTDGYIERIDEVFK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPY (Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_HAES22.348e-3344.06Ribosome-recycling factor OS=Haemophilus somnus (s... [more]
RRF_HAES12.348e-3344.06Ribosome-recycling factor OS=Haemophilus somnus (s... [more]
RRF_ERWCT2.348e-3348.23Ribosome-recycling factor OS=Erwinia carotovora su... [more]
RRF_SHESH3.067e-3346.85Ribosome-recycling factor OS=Shewanella sediminis ... [more]
RRF_SHEHH3.067e-3345.45Ribosome-recycling factor OS=Shewanella halifaxens... [more]
RRF_ROSCS3.067e-3346.85Ribosome-recycling factor OS=Roseiflexus castenhol... [more]
RRF_PHOLL3.067e-3348.23Ribosome-recycling factor OS=Photorhabdus luminesc... [more]
RRF_GEOMG3.067e-3346.04Ribosome-recycling factor OS=Geobacter metalliredu... [more]
RRF_DESOH3.067e-3345.77Ribosome-recycling factor OS=Desulfococcus oleovor... [more]
RRF_YERPY4.006e-3347.89Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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