CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPS (Ribosome-recycling factor OS=Yersinia pseudotuberculosis GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPP (Ribosome-recycling factor OS=Yersinia pestis (strain Pestoides F) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPN (Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPG (Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPE (Ribosome-recycling factor OS=Yersinia pestis GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPB (Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERPA (Ribosome-recycling factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERP3 (Ribosome-recycling factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 68/142 (47.89%), Postives = 104/142 (73.24%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA    + L K+K++SED  +    D+QKLTD Y+KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANDKVKALLKDKEISEDEDRRSQDDVQKLTDAYIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHESA (Ribosome-recycling factor OS=Shewanella sp. (strain ANA-3) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISEVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEPW (Ribosome-recycling factor OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 67/143 (46.85%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYGS   LK +A ++  D+ +L +  +D++ + ++EKAI+SSDLG+ P + G  IR+ LP LT ERRK+L KVV  +AE G++AVRN+RRDA    + L+KEK+ +ED+V+    ++QK TD ++KKID I
Sbjct:   32 AHPSLLDTIQVPYYGSLTPLKQVASVSIGDARTLNVSVFDRTMIAAVEKAIMSSDLGLNPMSAGATIRIPLPALTEERRKDLIKVVRAEAENGRIAVRNVRRDANSDVKALEKEKECTEDDVRRTEDEVQKFTDAHIKKIDEI 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_YERPS4.006e-3347.89Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_YERPP4.006e-3347.89Ribosome-recycling factor OS=Yersinia pestis (stra... [more]
RRF_YERPN4.006e-3347.89Ribosome-recycling factor OS=Yersinia pestis bv. A... [more]
RRF_YERPG4.006e-3347.89Ribosome-recycling factor OS=Yersinia pestis bv. A... [more]
RRF_YERPE4.006e-3347.89Ribosome-recycling factor OS=Yersinia pestis GN=fr... [more]
RRF_YERPB4.006e-3347.89Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_YERPA4.006e-3347.89Ribosome-recycling factor OS=Yersinia pestis bv. A... [more]
RRF_YERP34.006e-3347.89Ribosome-recycling factor OS=Yersinia pseudotuberc... [more]
RRF_SHESA4.006e-3344.06Ribosome-recycling factor OS=Shewanella sp. (strai... [more]
RRF_SHEPW4.006e-3346.85Ribosome-recycling factor OS=Shewanella piezotoler... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
back to top