CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHEON (Ribosome-recycling factor OS=Shewanella oneidensis GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGVEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEI 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPIN (Ribosome-recycling factor OS=Leptospira interrogans GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV  ++EE KVA+RNIRRDA++  +K    + +S+D +K +   +QK+TD Y+ KI ++
Sbjct:   33 ANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGMSQDEIKSVQDQIQKITDSYIDKISAL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPIC (Ribosome-recycling factor OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NP++++ I V+YYG+   +  +  I+ P+   L+I PYDK  +K IEKAI +S LG+ P NDG VIR+ +P+LT ERRKEL+KVV  ++EE KVA+RNIRRDA++  +K    + +S+D +K +   +QK+TD Y+ KI ++
Sbjct:   33 ANPSLVEDIRVDYYGNQTPINQLGNISVPEPRMLVISPYDKGIMKDIEKAIQTSGLGLQPTNDGVVIRIVIPELTGERRKELAKVVKSKSEEKKVAIRNIRRDAMEDLKK--HTEGMSQDEIKSVQDQIQKITDSYIDKISAL 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HAEDU (Ribosome-recycling factor OS=Haemophilus ducreyi GN=frr PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 4.006e-33
Identity = 62/143 (43.36%), Postives = 102/143 (71.33%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            + P++LD I+VEYYGS   L+ +A +   D+ +L +  +D+S + ++EKAI++SDLG+ P++ G  IR+ LP LT ERR++L K+V  + E+GK+A+RN+RRDA    + L K+K++SED  +    ++QK+TD Y+KK+D +
Sbjct:   32 AQPSLLDGIQVEYYGSATPLRQVANVVAEDARTLAVNVFDRSLISAVEKAILTSDLGLNPSSAGATIRVPLPALTEERRRDLIKIVKNEGEQGKIAIRNVRRDANDQIKALLKDKEISEDEERKAQDEIQKITDGYVKKVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_YERE8 (Ribosome-recycling factor OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 67/142 (47.18%), Postives = 105/142 (73.94%), Query Frame = -2
Query:  225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650
            ++P++LD I+VEYYG+   L+ +A I   DS +L +  +D+S   ++EKAI++SDLG+ P++ G VIR+ LP LT ERRK+L KVV  +AE+G+V++RN+RRDA +  + L K+K++SED  +    D+QKLTD ++KK+D+
Sbjct:   32 ASPSILDGIQVEYYGTATPLRQLANIVVEDSRTLALTVFDRSLSAAVEKAIMTSDLGLNPSSAGTVIRVPLPALTEERRKDLIKVVRAEAEQGRVSIRNVRRDANEKVKALLKDKEISEDEDRRSQDDIQKLTDAFIKKVDA 173          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XANCP (Ribosome-recycling factor OS=Xanthomonas campestris pv. campestris GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++PA+LD I+V+ YG+   L  +A I+  +  SL+I  +DK  +K +EKAI +SDLG+TP   G VIRL LP LT ERRKELSK V  + E+ KVA+RNIRRDA +  + L K+K+++ED  +    D+QKLTD+ +K +D + K
Sbjct:   32 ASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDAKVAIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XANCB (Ribosome-recycling factor OS=Xanthomonas campestris pv. campestris (strain B100) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++PA+LD I+V+ YG+   L  +A I+  +  SL+I  +DK  +K +EKAI +SDLG+TP   G VIRL LP LT ERRKELSK V  + E+ KVA+RNIRRDA +  + L K+K+++ED  +    D+QKLTD+ +K +D + K
Sbjct:   32 ASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDAKVAIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_XANC8 (Ribosome-recycling factor OS=Xanthomonas campestris pv. campestris (strain 8004) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 70/145 (48.28%), Postives = 100/145 (68.97%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            ++PA+LD I+V+ YG+   L  +A I+  +  SL+I  +DK  +K +EKAI +SDLG+TP   G VIRL LP LT ERRKELSK V  + E+ KVA+RNIRRDA +  + L K+K+++ED  +    D+QKLTD+ +K +D + K
Sbjct:   32 ASPALLDNIKVKAYGTDTPLNQVASISVSEGRSLVISLFDKGMIKDVEKAIYASDLGLTPTVVGTVIRLNLPPLTEERRKELSKSVHGEGEDAKVAIRNIRRDANQQVKDLLKDKQVTEDEARGAEDDIQKLTDKAIKDVDEVVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_STACT (Ribosome-recycling factor OS=Staphylococcus carnosus (strain TM300) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 66/146 (45.21%), Postives = 105/146 (71.92%), Query Frame = -2
Query:  213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650
            +N  +L  ++V+YYG+P  ++ +A IN P+   L++ PYDK+SL  IE+AI +++LG+ P++DGEVIR+ +P LT ERRKEL K V K  E  KV++RNIRRD+    +K +KE  +SED ++  + D+QK+TDE +K++D + ++
Sbjct:   31 ANSNLLAGVKVDYYGAPTPVQQLASINVPEPRLLVVSPYDKTSLSDIERAINAANLGVNPSSDGEVIRIMVPALTEERRKELVKDVKKMGENAKVSIRNIRRDSNDDLKKDEKEGVISEDELRTGTDDVQKITDESIKEVDKVLEE 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SHESR (Ribosome-recycling factor OS=Shewanella sp. (strain MR-7) GN=frr PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 5.231e-33
Identity = 63/143 (44.06%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I+V YYG+   L  +A +   D+ +L +  +D+S+++++EKAI+SSDLG+ P + G  +R+ LP LT ERRK+  KVV  +AE G+VA+RN+RRDA+   +KL+K K+ +ED+V+    ++QK TD ++KK+D I
Sbjct:   32 AHPSLLDSIQVSYYGTMTPLNQVANVGIEDARTLSVTVFDRSAIQAVEKAIMSSDLGLNPMSAGATLRIPLPALTEERRKDFIKVVRAEAEGGRVAIRNVRRDAISDVKKLEKAKECTEDDVRRFEDEVQKFTDAHIKKVDEI 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_SHEON4.006e-3344.06Ribosome-recycling factor OS=Shewanella oneidensis... [more]
RRF_LEPIN4.006e-3346.15Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_LEPIC4.006e-3346.15Ribosome-recycling factor OS=Leptospira interrogan... [more]
RRF_HAEDU4.006e-3343.36Ribosome-recycling factor OS=Haemophilus ducreyi G... [more]
RRF_YERE85.231e-3347.18Ribosome-recycling factor OS=Yersinia enterocoliti... [more]
RRF_XANCP5.231e-3348.28Ribosome-recycling factor OS=Xanthomonas campestri... [more]
RRF_XANCB5.231e-3348.28Ribosome-recycling factor OS=Xanthomonas campestri... [more]
RRF_XANC85.231e-3348.28Ribosome-recycling factor OS=Xanthomonas campestri... [more]
RRF_STACT5.231e-3345.21Ribosome-recycling factor OS=Staphylococcus carnos... [more]
RRF_SHESR5.231e-3344.06Ribosome-recycling factor OS=Shewanella sp. (strai... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
back to top