CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURM9 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10229) GN=frr PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.683e-31 Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVAVRN+RRDA + +KL K+K++SED+ + S D+QKLTD+++ +ID + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURM7 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10247) GN=frr PE=3 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 1.683e-31 Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVAVRN+RRDA + +KL K+K++SED+ + S D+QKLTD+++ +ID + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THERP (Ribosome-recycling factor OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 63/144 (43.75%), Postives = 103/144 (71.53%), Query Frame = -2 Query: 213 PAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 644 P++L+ +EV YYG+P L +A I+ P++ L++Q +D++++ ++EKAI S+LG+ P+ DG+ +R+ LP LT ERR++L K+V ++ EE KVA+RNIRRDAL ++L K K++SED+ + LQ LT+ Y+ + D + KQ Sbjct: 34 PSLLEHLEVNYYGTPTPLNQLATISAPEARLLVVQVWDRNAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEEVEETKVAIRNIRRDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQ 177
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCTU (Ribosome-recycling factor OS=Mycobacterium tuberculosis GN=frr PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + EE KV+VRNIRR A++ +++KE + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCTA (Ribosome-recycling factor OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + EE KV+VRNIRR A++ +++KE + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCBO (Ribosome-recycling factor OS=Mycobacterium bovis GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K + EE KV+VRNIRR A++ +++KE + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPY (Ribosome-recycling factor OS=Helicobacter pylori GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = -2 Query: 216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +TSE+RK ++K E+ KVAVRNIR+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELP2 (Ribosome-recycling factor OS=Helicobacter pylori (strain P12) GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = -2 Query: 216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +TSE+RK ++K E+ KVAVRNIR+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORGL (Ribosome-recycling factor OS=Corynebacterium glutamicum GN=frr PE=1 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NPAM + + EYYG P + ++ I P+ LLI+PY+ SS++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERRK++ K+ + E+GK+A+RNIRR + +KLQK+ ED V+ +L K+T ++ ++D + Sbjct: 32 ANPAMFNGVMAEYYGVPTPITQMSGITVPEPRMLLIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ALTMD (Ribosome-recycling factor OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=frr PE=3 SV=1) HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31 Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++LD I V YYG LK +A + DS +L + +DKS+++++EKAI+ SDLG+ P + G IR+ LP LT ERRK+L +VV +AE G+VA+RNIRRDA + L KEK++SED + ++Q +T+E++KK+DS+ Sbjct: 32 AHPSLLDGIMVPYYGVDTPLKQVANVVAEDSRTLALTVFDKSAIQAVEKAIMQSDLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRNEAEGGRVAIRNIRRDANGDVKDLLKEKEISEDESRAAEENIQSITNEFIKKVDSL 174 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |