CF832535

Overview
NameCF832535
Unique NameCF832535
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2930 contig Csv1_Contig2930:415..1065. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURM9 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10229) GN=frr PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.683e-31
Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVAVRN+RRDA +  +KL K+K++SED+ +  S D+QKLTD+++ +ID +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURM7 (Ribosome-recycling factor OS=Burkholderia mallei (strain NCTC 10247) GN=frr PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.683e-31
Identity = 62/143 (43.36%), Postives = 103/143 (72.03%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++  +LD ++V+YYGS V +  +A +   D+ ++ +QP++K+ +  +EKAI  +DLG+ P   G++IR+ +P LT ERR+EL+KVV  + E  KVAVRN+RRDA +  +KL K+K++SED+ +  S D+QKLTD+++ +ID +
Sbjct:   33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKTMVAKVEKAIREADLGLNPATSGDLIRVPMPPLTEERRRELTKVVKSEGETAKVAVRNLRRDANEQLKKLVKDKEISEDDERRASDDVQKLTDKHVAEIDKL 175          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_THERP (Ribosome-recycling factor OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 63/144 (43.75%), Postives = 103/144 (71.53%), Query Frame = -2
Query:  213 PAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 644
            P++L+ +EV YYG+P  L  +A I+ P++  L++Q +D++++ ++EKAI  S+LG+ P+ DG+ +R+ LP LT ERR++L K+V ++ EE KVA+RNIRRDAL   ++L K K++SED+ +     LQ LT+ Y+ + D + KQ
Sbjct:   34 PSLLEHLEVNYYGTPTPLNQLATISAPEARLLVVQVWDRNAVSAVEKAIRQSELGLNPSVDGQTLRIQLPPLTEERRRQLVKLVHEEVEETKVAIRNIRRDALADIKELLKNKEISEDDERRAEQRLQDLTNRYIAEADKLGKQ 177          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCTU (Ribosome-recycling factor OS=Mycobacterium tuberculosis GN=frr PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCTA (Ribosome-recycling factor OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_MYCBO (Ribosome-recycling factor OS=Mycobacterium bovis GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 63/145 (43.45%), Postives = 97/145 (66.90%), Query Frame = -2
Query:  216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L++IE AI +SDLG+ P NDG +IR+ +PQLT ERR+EL K    + EE KV+VRNIRR A++   +++KE +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPY (Ribosome-recycling factor OS=Helicobacter pylori GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = -2
Query:  216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +TSE+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELP2 (Ribosome-recycling factor OS=Helicobacter pylori (strain P12) GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 64/141 (45.39%), Postives = 99/141 (70.21%), Query Frame = -2
Query:  216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638
            +LD I+V+YYG+P +L  +  + + D+++L I P++K+ LK IE++I  +++G+ PNNDGE I+L  P +TSE+RK ++K      E+ KVAVRNIR+DA    +KL+K+K++SED  K     +QK+TDE +KKID   K
Sbjct:   36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTSEQRKLIAKDAKAMGEKAKVAVRNIRQDANNQVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_CORGL (Ribosome-recycling factor OS=Corynebacterium glutamicum GN=frr PE=1 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            +NPAM + +  EYYG P  +  ++ I  P+   LLI+PY+ SS++ IE AI +SDLG+ P NDG+V+R+T+PQLT ERRK++ K+   + E+GK+A+RNIRR  +   +KLQK+    ED V+    +L K+T  ++ ++D +
Sbjct:   32 ANPAMFNGVMAEYYGVPTPITQMSGITVPEPRMLLIKPYEMSSMQVIENAIRNSDLGVNPTNDGQVLRVTIPQLTEERRKDMVKLAKGKGEDGKIAIRNIRRKGMDQLKKLQKDGDAGEDEVQAAEKELDKVTAGFVAQVDEV 174          
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_ALTMD (Ribosome-recycling factor OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=frr PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.198e-31
Identity = 66/143 (46.15%), Postives = 101/143 (70.63%), Query Frame = -2
Query:  222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650
            ++P++LD I V YYG    LK +A +   DS +L +  +DKS+++++EKAI+ SDLG+ P + G  IR+ LP LT ERRK+L +VV  +AE G+VA+RNIRRDA    + L KEK++SED  +    ++Q +T+E++KK+DS+
Sbjct:   32 AHPSLLDGIMVPYYGVDTPLKQVANVVAEDSRTLALTVFDKSAIQAVEKAIMQSDLGLNPMSAGGSIRIPLPPLTEERRKDLIRVVRNEAEGGRVAIRNIRRDANGDVKDLLKEKEISEDESRAAEENIQSITNEFIKKVDSL 174          
The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_BURM91.683e-3143.36Ribosome-recycling factor OS=Burkholderia mallei (... [more]
RRF_BURM71.683e-3143.36Ribosome-recycling factor OS=Burkholderia mallei (... [more]
RRF_THERP2.198e-3143.75Ribosome-recycling factor OS=Thermomicrobium roseu... [more]
RRF_MYCTU2.198e-3143.45Ribosome-recycling factor OS=Mycobacterium tubercu... [more]
RRF_MYCTA2.198e-3143.45Ribosome-recycling factor OS=Mycobacterium tubercu... [more]
RRF_MYCBO2.198e-3143.45Ribosome-recycling factor OS=Mycobacterium bovis G... [more]
RRF_HELPY2.198e-3145.39Ribosome-recycling factor OS=Helicobacter pylori G... [more]
RRF_HELP22.198e-3145.39Ribosome-recycling factor OS=Helicobacter pylori (... [more]
RRF_CORGL2.198e-3143.36Ribosome-recycling factor OS=Corynebacterium gluta... [more]
RRF_ALTMD2.198e-3146.15Ribosome-recycling factor OS=Alteromonas macleodii... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bp
TTTTTTTTTTTTTTTTTACAAAGAGTCTAGAATAACTAATTTCCCCCTTT
CATTTCATAACAAAATATCCACCCGTGTCTCCCATTATTATCAAAAAATG
CCATTCTATGGGCAAACCAAAAAATAAAGAGTGCATTCTGAGATTCACTA
GAGAGCTCACCCTTACATTTGTGTGTAAACAATCATTAAACCTTCAACAA
CTCCTTCTCTTTCTGTTTGTAGATGCTATCAATCTTCTTCATATACTCAT
CTGTTAGTTTCTGTAAATCACTTGACAAGTCCTTCACATTGTCTTCAGAG
AGCTTCTTCTCCTTCTGAAGTTTTTCATAAGCTTTTAACGCATCTCTTCT
TATATTCCTAACTGCCACCTTCCCTTCTTCAGCCTGTTTGGCCACAACCT
TTGACAGTTCCTTCCTCCTTTCGGATGTCAATTGAGGAAGGGTTAACCGT
ATGACTTCACCATCATTGTTTGGGGTCATGCCAAGATCAGAGCTCACTAT
GGCCTTCTCTATAGACTTTAAGCTGGATTTGTCATATGGTTGAATCAATA
GAGAACTTGAATCAGGGGTATTGATTTGAGCTATGCTCTTCAAACTTACT
GGGCTTCCATAGTATTCCACCTCAATCTTATCTAGCATAGCTGGATTCGA
T
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