CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_LEPCP (Ribosome-recycling factor OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 65/143 (45.45%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P +LD++ V+YYGS + L +A + D+ ++ +QP++KS + IEKAI SDLG+ P++ G++IR+ +P LT ERRKEL+KVV E+ KVAVRN+RRDA +KL K+K +SED+ + ++QKLTD + +ID + Sbjct: 33 AHPGILDQVHVDYYGSNLPLSQVANVTLIDARTISVQPWEKSMAQKIEKAIRESDLGLNPSSMGDLIRVPMPALTEERRKELTKVVRHAGEDSKVAVRNLRRDANDQAKKLLKDKLISEDDERRSVDEVQKLTDRVIAEIDRL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_JANMA (Ribosome-recycling factor OS=Janthinobacterium sp. (strain Marseille) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 63/143 (44.06%), Postives = 99/143 (69.23%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD + VEYYG+P +L +A + D+ ++ +QP++K + +EKAI +DLG+ P GE+IR+ P LT ERRKE+ K+V +AE+ K+AVRNIRRDA ++ +KL KEK SED + ++QKLTD+++ +ID + Sbjct: 33 AHTGILDHVMVEYYGNPTNLSQVANVTLIDARTIGVQPFEKKMVAVVEKAIREADLGLNPATQGELIRVPTPPLTEERRKEMVKLVKSEAEDAKIAVRNIRRDANESLKKLVKEKACSEDEERRAQDEIQKLTDKFVIEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_HELPH (Ribosome-recycling factor OS=Helicobacter pylori (strain HPAG1) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 63/141 (44.68%), Postives = 99/141 (70.21%), Query Frame = -2 Query: 216 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 638 +LD I+V+YYG+P +L + + + D+++L I P++K+ LK IE++I +++G+ PNNDGE I+L P +T+E+RK ++K E+ KVAVRNIR+DA +KL+K+K++SED K +QK+TDE +KKID K Sbjct: 36 ILDHIKVDYYGTPTALNQVGSVMSLDATTLQISPWEKNLLKEIERSIQEANIGVNPNNDGETIKLFFPPMTTEQRKLIAKDAKAMGEKAKVAVRNIRQDANNKVKKLEKDKEISEDESKKAQEQIQKITDEAIKKIDESVK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_DESAH (Ribosome-recycling factor OS=Desulfobacterium autotrophicum (strain ATCC 43914 / DSM 3382 / HRM2) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 60/140 (42.86%), Postives = 101/140 (72.14%), Query Frame = -2 Query: 219 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 638 MLD ++V+YYG+ L +A I P+S + +QP+D S++K +EK I+ +++G+TP++DG++IR+T+P LT +RR+E++K V EE KVAVRNIRRD+ + LQK+ +SED ++Q +TDE++K+I++++ Sbjct: 36 MLDGVKVDYYGTLTPLNQMASIAIPESRMITVQPWDISAIKEVEKGILKANIGLTPSSDGKIIRITIPPLTEDRRREIAKTVHNTCEEFKVAVRNIRRDSNDTLKSLQKDGDISEDENFKAQKEVQDITDEFIKQIEAVF 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BURM1 (Ribosome-recycling factor OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 61/143 (42.66%), Postives = 103/143 (72.03%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +LD ++V+YYGS V + +A + D+ ++ +QP++K+ + +EKAI +DLG+ P G++IR+ +P LT ERR+EL+KVV + E KVA+RN+RRDA +A +KL K+K++SED+ + D+QKLTD+++ +ID + Sbjct: 33 AHTGLLDHVQVDYYGSMVPISQVANLTLVDARTIGVQPWEKNMVAKVEKAIREADLGLNPATAGDLIRVPMPPLTEERRRELTKVVKGEGETAKVAIRNLRRDANEALKKLVKDKEISEDDERRAGDDVQKLTDKHVAEIDKL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORT9 (Ribosome-recycling factor OS=Borrelia turicatae (strain 91E135) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 63/143 (44.06%), Postives = 101/143 (70.63%), Query Frame = -2 Query: 219 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 647 N ++ DK+ V+YYG L +A ++ P++ ++IQP+DKS L IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K K AEE KVA RN+R++ +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 32 NSSLFDKVLVDYYGEKTPLTRVANVSIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGAVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARNVRQELNSKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIF 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORHD (Ribosome-recycling factor OS=Borrelia hermsii (strain DAH) GN=frr PE=3 SV=1) HSP 1 Score: 134.42 bits (337), Expect = 4.896e-31 Identity = 64/141 (45.39%), Postives = 100/141 (70.92%), Query Frame = -2 Query: 219 AMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIY 641 A+ DK+ V+YYG L +A I+ P++ ++IQP+DKS L IE+AI+SSDL M P++DG V+R+ +P LT ERRKE+ K K AEE KVA RN+R++ +K +K+ +++ED+++ + D+Q+ T+ Y+KKID I+ Sbjct: 34 ALFDKVLVDYYGEKTPLTRVANISIPEARLIVIQPWDKSLLSKIEQAILSSDLSMNPSSDGSVLRIKVPVLTVERRKEIVKQAKKIAEEYKVAARNVRQELNNKAKKQEKDSQITEDDLRRILDDIQRDTNSYIKKIDEIF 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALRD (Ribosome-recycling factor OS=Salinibacter ruber (strain DSM 13855) GN=frr PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 6.395e-31 Identity = 58/146 (39.73%), Postives = 101/146 (69.18%), Query Frame = -2 Query: 213 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 650 ++PAML+ + VEYYGS L+ +A ++ P +++QP+D++++++IE+ I+ +DLG+ PNNDGE IR+ +P L+ ERRKEL + ++AEE K+++RNIRRDA + + + + SED + DLQ +TD + + ++ + +Q Sbjct: 36 ASPAMLENVTVEYYGSQTPLEQVASVSAPQPDLIVVQPFDRNAIENIERGIMKADLGLNPNNDGEKIRIPIPPLSEERRKELVETSRERAEETKISIRNIRRDAKNEIQNVVEAENFSEDVLYGAEEDLQDITDAHTETVEGLLEQ 181
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RICCK (Ribosome-recycling factor OS=Rickettsia canadensis (strain McKiel) GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31 Identity = 65/142 (45.77%), Postives = 97/142 (68.31%), Query Frame = -2 Query: 213 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 638 +LD + VE YGS + L +A I+TPD+ ++ +Q +DKS + +EK I ++LG+TP DG++IRL +P LT ERRKEL K+ K E+ K+++RNIRRD + +KL+K L++D LS +QKLT++Y K+DS KQ Sbjct: 37 LLDSVIVEAYGSKIPLSQVASISTPDARTINVQVWDKSMVSLVEKGITIANLGLTPATDGQLIRLPIPILTEERRKELVKLAHKYGEDTKISLRNIRRDGNEELKKLEKNNILTKDEHHSLSEQVQKLTNDYSNKVDSAIKQ 178
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_POLSJ (Ribosome-recycling factor OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=frr PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 8.352e-31 Identity = 62/143 (43.36%), Postives = 97/143 (67.83%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 +NP +LD + V+YYGS V + +A ++ D+ ++ + P++K IEKAI SDLG+ P G++IR+ +P +T ERRKEL+KVV + E KVAVRN+RRDA + +KL KEK +SED+ + ++QK TD ++ ++D + Sbjct: 33 ANPGLLDTVHVDYYGSMVPISQVANVSLLDARTISVSPWEKGMGAKIEKAIRDSDLGLNPAAQGDLIRVPMPAMTEERRKELTKVVRAEGEHAKVAVRNLRRDANEGVKKLLKEKLVSEDDERRAQDEIQKFTDRFIAEVDKL 175 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |