CF832535
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORBZ (Ribosome-recycling factor OS=Borrelia burgdorferi (strain ZS7) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 62/139 (44.60%), Postives = 99/139 (71.22%), Query Frame = -2 Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638 + DKI ++Y+G + ++ I P++ ++IQP+DK+ L IE+AI++SDL M P++DG VIR+ +P LTSERR+++ K K AEE K++ RNIR+D +K +KE +++ED++K + D+QK TD Y+KKID+I Sbjct: 35 IFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQPWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAI 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORBU (Ribosome-recycling factor OS=Borrelia burgdorferi GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 64/139 (46.04%), Postives = 97/139 (69.78%), Query Frame = -2 Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638 + D+I ++Y+ + ++ I P++ ++IQP+DKS L IE+AI++SDL M P+NDG VIR+ +P LTSERR+E+ K K AEE K++ RNIR+D +K +KE +++ED +K + D+QK TD Y+KKIDSI Sbjct: 35 IFDRICIQYHDRRTPITQVSSIRIPEARLVVIQPWDKSILNKIEQAILNSDLSMNPSNDGSVIRIKVPNLTSERRQEIVKHAKKIAEEHKISTRNIRQDLNNKVKKQEKESEITEDCLKRILDDIQKSTDMYIKKIDSI 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_BORAP (Ribosome-recycling factor OS=Borrelia afzelii (strain PKo) GN=frr PE=3 SV=1) HSP 1 Score: 131.339 bits (329), Expect = 4.145e-30 Identity = 62/139 (44.60%), Postives = 99/139 (71.22%), Query Frame = -2 Query: 222 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 638 + DKI ++Y+G + ++ I P++ ++IQP+DK+ L IE+AI++SDL M P++DG VIR+ +P LTSERR+++ K K AEE K++ RNIR+D +K +KE +++ED++K + D+QK TD Y+KKID+I Sbjct: 35 IFDKIFIQYHGQRTPITQVSSIRIPEARLVVIQPWDKTILNKIEQAILNSDLSMNPSSDGSVIRIKVPALTSERRQDIVKHAKKIAEEHKISTRNIRQDLNNKVKKQEKESEITEDSLKRILDDIQKSTDIYIKKIDAI 173
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_VIBF1 (Ribosome-recycling factor OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 67/143 (46.85%), Postives = 95/143 (66.43%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++P++L I VEYYG+ L +A + DS +L I +DK +EKAI+ SDLG+ P + G VIR+ LP LT ERRK+L K+V +AE G+VA+RNIRRDA + L KEK++SED+ + ++QKLTD +K ID + Sbjct: 32 AHPSLLSGISVEYYGAQTPLNQVANVVAEDSRTLAITVFDKELAGLVEKAIMMSDLGLNPMSAGTVIRVPLPPLTEERRKDLVKIVRGEAENGRVAIRNIRRDANGDVKALLKEKEISEDDDRRAQDEIQKLTDAAVKSIDEV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_TREDE (Ribosome-recycling factor OS=Treponema denticola GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 63/143 (44.06%), Postives = 94/143 (65.73%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ A+ DKI V YG L +A I+ P++ ++IQP+DK L IEKA++ +DL + P NDG+VIR+ +P LT +RRK+L+K AE +V+VRNIRRD + +KLQK+ K+SED +K QK TD Y+ +I+ + Sbjct: 32 ASSALFDKIRVNCYGESTPLNQLANISIPEARLVVIQPWDKGLLVEIEKAVLQADLSVNPTNDGKVIRIAIPPLTEDRRKDLAKKAKTIAENSRVSVRNIRRDGIDEAKKLQKDGKISEDQLKTAEDAFQKSTDAYIAEINKV 174
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_SALTO (Ribosome-recycling factor OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 62/145 (42.76%), Postives = 93/145 (64.14%), Query Frame = -2 Query: 216 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 650 +N AM KI ++YYGSP L +A I P+ ++I+PYD S ++EKAI SDLG+ PNN+G +R+ LPQ+T ERR+E+ KV + EE KVAVRN+RR A + ++L K ++ ED+ + +L LT ++ +D + K Sbjct: 32 ANAAMFSKIVIDYYGSPTPLPQMASIGVPEPRMVIIKPYDTSQTNAMEKAIRDSDLGVNPNNEGNQLRILLPQMTEERRREMIKVARHKGEEAKVAVRNVRRKAKEELDRLVKAGEVGEDDGRRAEKELDDLTQRFVGTVDELIK 176
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOPT (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain TIE-1) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +ML+ ++V+ YGS + L +A ++ P+ + +Q +DKS +K++EK IV S+LG++P +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ K L ++QK TD + +ID + Sbjct: 33 ASASMLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_RHOPA (Ribosome-recycling factor OS=Rhodopseudomonas palustris GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 62/143 (43.36%), Postives = 100/143 (69.93%), Query Frame = -2 Query: 222 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 650 ++ +ML+ ++V+ YGS + L +A ++ P+ + +Q +DKS +K++EK IV S+LG++P +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ K L ++QK TD + +ID + Sbjct: 33 ASASMLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_PSYA2 (Ribosome-recycling factor OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 61/142 (42.96%), Postives = 99/142 (69.72%), Query Frame = -2 Query: 225 SNPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 650 ++P ML + V YYGS L +A +N DS +LL+QP+D++ +++I+KAI +DLG+ P +VIR+ +P LT E R+++ K+ +AE +V++RNIRRD + ++L KEK++SED+ S D+QK+TD+Y++ IDS Sbjct: 32 AHPGMLSGVMVSYYGSDTPLNQVASVNVEDSRTLLVQPFDRTMVQAIDKAIREADLGLNPMT-ADVIRVPMPALTEETRRDMQKLARGEAENSRVSIRNIRRDMMNDIKELAKEKEISEDDEHRASDDIQKITDKYIETIDS 172
BLAST of CF832535 vs. ExPASy Swiss-Prot
Match: RRF_NOCSJ (Ribosome-recycling factor OS=Nocardioides sp. (strain BAA-499 / JS614) GN=frr PE=3 SV=1) HSP 1 Score: 130.954 bits (328), Expect = 5.414e-30 Identity = 64/144 (44.44%), Postives = 96/144 (66.67%), Query Frame = -2 Query: 216 NPAMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 647 NP+M +KI V+YYGSP L+ +A P++ +LI PYD+ ++ +I KAI SDLG+ P +DG+VIR P+LT ERRKE K+ +AEEG+VAVRN+RR A + E+L+K+ ++ +D++ L LT ++ ID + K Sbjct: 33 NPSMFNKIVVDYYGSPTPLQQLASFTAPEARIILIAPYDQGAMHNILKAIRDSDLGVNPADDGKVIRCVFPELTEERRKEYIKISRHKAEEGRVAVRNLRRTAKQHLERLEKDGEVGQDDLTGAEKRLDGLTKKHTDAIDEMLK 176 The following BLAST results are available for this feature:
BLAST of CF832535 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832535 ID=CF832535; Name=CF832535; organism=Citrus sinensis; type=EST; length=651bpback to top |