CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROMT (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL2A) GN=frr PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.333e-39
Identity = 78/141 (55.32%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRR+A+   +K +K+  LSED  +D    +QK TD ++K I+
Sbjct:   29 ANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRREAIDRVKKSEKDGDLSEDQSRDEQETIQKETDNFIKDIE 169          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROM1 (Ribosome-recycling factor OS=Prochlorococcus marinus (strain NATL1A) GN=frr PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 8.333e-39
Identity = 78/141 (55.32%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I VEYYG+   LKS+A I TPDS ++ IQP+D  SL SIEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRR+A+   +K +K+  LSED  +D    +QK TD ++K I+
Sbjct:   29 ANTSLLDRISVEYYGAETPLKSLATITTPDSQTIAIQPFDLGSLASIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRREAIDRVKKSEKDGDLSEDQSRDEQEKIQKETDNFIKDIE 169          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SYNS3 (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9311) GN=frr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 74/141 (52.48%), Postives = 105/141 (74.47%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +NP +LD+I VEYYG+   LKS+A ++TPDS ++ +QP+D  SL  IEKAI +SDLG TPNNDG++IR+ +P LT ERRKE  K+ AK +EEGKVA+R++RRDA+   +K +KE  LSED  +D    +QK TD ++ +++
Sbjct:   29 ANPSLLDRINVEYYGADTPLKSLASLSTPDSQTIAVQPFDMGSLALIEKAIATSDLGFTPNNDGKIIRINVPPLTEERRKEFCKLAAKYSEEGKVALRSVRRDAIDKIKKQEKEGDLSEDQSRDEQDQVQKTTDRFIAELE 169          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_NATTJ (Ribosome-recycling factor OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=frr PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.088e-38
Identity = 75/143 (52.45%), Postives = 107/143 (74.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +L+ I V+YYG    L  +A I+ P+   L++QPYDKS+++ IEKAI+ SD+G+TPNNDG+VIRL +PQLT ERR EL K+V ++ E+ KV VRN+RRDA    +KL+KEK++SED       ++QK+TD+Y+KKID +
Sbjct:   31 ANPSILEGINVDYYGMATPLNQLANISAPEPRLLVVQPYDKSAIEDIEKAILKSDVGLTPNNDGQVIRLAVPQLTEERRNELVKIVRQKGEDTKVVVRNVRRDANDELKKLEKEKEISEDESIRGQDEIQKITDKYIKKIDEV 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_GEOTN (Ribosome-recycling factor OS=Geobacillus thermodenitrificans (strain NG80-2) GN=frr PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.421e-38
Identity = 75/146 (51.37%), Postives = 111/146 (76.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +N  +L+K+ V+YYG    +  +A I+ P++  L+IQPYDKS +K +EKAI++SDLG+TP+NDG VIRL +P LT ERR+EL+K+V K +EE KVAVRNIRRDA    +KL+K  +++ED ++  + ++QKLTD ++ KID+I K+
Sbjct:   32 ANAGLLEKVTVDYYGVATPINQLATISVPEARMLVIQPYDKSVIKEMEKAILASDLGVTPSNDGSVIRLVIPPLTEERRRELAKLVKKYSEEAKVAVRNIRRDANDELKKLEKNSEITEDELRSYTDEVQKLTDSHIAKIDAITKE 177          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESHD (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=frr PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.421e-38
Identity = 79/143 (55.24%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK    D+QK+TD+++K+ID I
Sbjct:   32 ANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIDRI 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ALKOO (Ribosome-recycling factor OS=Alkaliphilus oremlandii (strain OhILAs) GN=frr PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.856e-38
Identity = 74/143 (51.75%), Postives = 107/143 (74.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+I VEYYGSP  +K IA I  P+   + IQPYD S+L SIEKAI+ SDLG+ P+NDG++IR+ +PQLT ERRKEL+KV  K +E+ KV +RN RR+A    +K+QK+ +++ED +K    ++QK+TD+++K +D +
Sbjct:   32 ANPAMLDRIVVEYYGSPTPIKQIAAITAPEPRIISIQPYDGSALSSIEKAILQSDLGVNPSNDGKLIRIIVPQLTEERRKELTKVAKKTSEDAKVVLRNERRNANDRLKKMQKDNEITEDELKTAQDEVQKITDKFIKMVDEL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACP2 (Ribosome-recycling factor OS=Bacillus pumilus (strain SAFR-032) GN=frr PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.424e-38
Identity = 76/145 (52.41%), Postives = 105/145 (72.41%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +N  +LDK+ V+YYG+   L  IA I  P++  L+I PYDK+++  IEK+I  SDLG+TP +DG VIR+ +P LT ERRKEL KVV K +EE KVAVRN+RRDA    +KL+K  +++ED ++  + D+QKLTDEY+ KID + K
Sbjct:   32 ANASLLDKVTVDYYGAQTPLNQIASITVPEARMLIITPYDKTAIGDIEKSIQKSDLGITPTSDGNVIRIAIPALTEERRKELVKVVRKYSEEAKVAVRNVRRDANDELKKLEKNGEITEDELRSSTEDVQKLTDEYVAKIDDVMK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRMU (Ribosome-recycling factor OS=Streptococcus mutans GN=frr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 78/143 (54.55%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+IEVEYYG P  L  +A I  P++  LL+ P+DKSSLK IE AI +SD+G+ P NDG VIRL +P LT E RKEL+K V K  E  KVA+RNIRRDA+   +K +K K+++ED +K L  D+QK+TDE +K IDS+
Sbjct:   32 ANASLLDRIEVEYYGVPTPLNQLASITVPEARVLLVSPFDKSSLKDIEHAINASDIGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKVAIRNIRRDAMDEAKKQEKIKEITEDELKSLEKDIQKVTDEAVKHIDSM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESHY (Ribosome-recycling factor OS=Desulfitobacterium hafniense (strain Y51) GN=frr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 78/143 (54.55%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLDKI VEYYG+   +  +A I+ P+   L IQP+DKSSL  IEKAI+ SDLG+ P++DG VIRL +PQLT+ERR E+ K V K+AE+ +VAVRNIRRD+    +KL+K+   SED VK    D+QK+TD+++K+I+ I
Sbjct:   32 ANPNMLDKITVEYYGTQTPVNQLANISVPEPRMLTIQPWDKSSLPMIEKAILKSDLGLNPSSDGTVIRLLIPQLTAERRTEIVKTVKKKAEDSRVAVRNIRRDSNDELKKLEKDHTASEDEVKRAQDDVQKMTDKFVKEIERI 174          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_PROMT8.333e-3955.32Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_PROM18.333e-3955.32Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_SYNS31.088e-3852.48Ribosome-recycling factor OS=Synechococcus sp. (st... [more]
RRF_NATTJ1.088e-3852.45Ribosome-recycling factor OS=Natranaerobius thermo... [more]
RRF_GEOTN1.421e-3851.37Ribosome-recycling factor OS=Geobacillus thermoden... [more]
RRF_DESHD1.421e-3855.24Ribosome-recycling factor OS=Desulfitobacterium ha... [more]
RRF_ALKOO1.856e-3851.75Ribosome-recycling factor OS=Alkaliphilus oremland... [more]
RRF_BACP22.424e-3852.41Ribosome-recycling factor OS=Bacillus pumilus (str... [more]
RRF_STRMU4.136e-3854.55Ribosome-recycling factor OS=Streptococcus mutans ... [more]
RRF_DESHY4.136e-3854.55Ribosome-recycling factor OS=Desulfitobacterium ha... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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