CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOPT (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain TIE-1) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 62/139 (44.60%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ML+ ++V+ YGS + L  +A ++ P+   + +Q +DKS +K++EK IV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L  ++QK TD  + +ID +
Sbjct:   37 MLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOPA (Ribosome-recycling factor OS=Rhodopseudomonas palustris GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 62/139 (44.60%), Postives = 97/139 (69.78%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ML+ ++V+ YGS + L  +A ++ P+   + +Q +DKS +K++EK IV S+LG++P  +G+VIRL +P+L  ERRKEL KV  K AE  +VAVR++RRD L   +KL+K  ++SED+ K L  ++QK TD  + +ID +
Sbjct:   37 MLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOOB (Ribosome-recycling factor OS=Rhodococcus opacus (strain B4) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 59/145 (40.69%), Postives = 97/145 (66.90%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M ++I ++YYG+   +  +A IN P++  ++++PY+ S L +IE AI +SDLG+ P+NDG +IR+++PQLT ERR+EL K    + E+ KV+VRN+RR A+    ++QK+ +  ED V     +L K T  Y+ ++D + K
Sbjct:   32 ANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKPYEASQLNAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVRNVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_NITEC (Ribosome-recycling factor OS=Nitrosomonas eutropha (strain C91) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 58/139 (41.73%), Postives = 96/139 (69.06%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +LD I V+YYG+P  ++ +A +   D+ ++ + P+DK +  +IEKAI  SD+G+ P   GE++R+ +P LT ERRK+L+K+V  +AE  ++A+RNIRRDA    ++L K+K ++ED  +    D+QKLTD Y+ ++D +
Sbjct:   36 LLDHITVDYYGTPTPIRQLANVTLADARTIGVIPWDKKAFSAIEKAIRDSDMGLNPMTAGEMVRVPMPPLTEERRKDLTKIVRTEAETARIAMRNIRRDANTQLKELLKDKLIAEDEDRRAQDDIQKLTDRYIAEVDKL 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCUA (Ribosome-recycling factor OS=Mycobacterium ulcerans (strain Agy99) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR++L K    + EE +V+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCMM (Ribosome-recycling factor OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +NP M  +I ++YYG+   +  +A IN P++  ++I+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR++L K    + EE +V+VRNIRR A++   +++K+ +  ED V     DL K T +Y+ +ID + K
Sbjct:   32 ANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MESFL (Ribosome-recycling factor OS=Mesoplasma florum GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 64/145 (44.14%), Postives = 99/145 (68.28%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            ++  MLDK+ V YYG+P  +   AQI+TP+   L+I+P+DK+ ++ +  AI  SDL + P +D EV+R+ +P LT E RK+L K + K+ E  KV +RNIRRD++   +  +K+K +SED VK + +D+QKLTD  +K++D I K
Sbjct:   31 ASATMLDKVMVNYYGTPTPVNQTAQISTPEPQLLVIKPWDKTLIQEVVAAINKSDLNLNPVSDAEVVRINIPALTEEIRKDLVKKMNKELENFKVRIRNIRRDSI---DTAKKDKSISEDVVKGIETDIQKLTDSSIKQLDEISK 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CHLSY (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++  +++ + VE YG  + L  +A I+ P+   ++IQPYD + +K+IEKAI  SDLG+ P+NDG VIRL +P LT ERR+EL K+V  + EE K++VRN RRDA+   +KL+ EK +SED +      +Q+LTD   +++D I
Sbjct:   32 ASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CHLAA (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            ++  +++ + VE YG  + L  +A I+ P+   ++IQPYD + +K+IEKAI  SDLG+ P+NDG VIRL +P LT ERR+EL K+V  + EE K++VRN RRDA+   +KL+ EK +SED +      +Q+LTD   +++D I
Sbjct:   32 ASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_AZOSB (Ribosome-recycling factor OS=Azoarcus sp. (strain BH72) GN=frr PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30
Identity = 64/142 (45.07%), Postives = 96/142 (67.61%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            +LD + VEYYGS V +  +A I   D+ ++ +Q ++K  L  +EKAI   DLG+ P N GE+IR+ +P LT ERR++L+KVV ++ E  KVAVRN+RRDA +  +   K+K +SED+ +    D+QKLTD+Y+ +ID +  Q
Sbjct:   36 LLDHVMVEYYGSMVPINQVANITLIDARTIGVQTWEKPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQEGETAKVAVRNLRRDANQHLKDAVKDKTISEDDERRSQDDIQKLTDKYVAEIDKLLAQ 177          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_RHOPT9.234e-3044.60Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_RHOPA9.234e-3044.60Ribosome-recycling factor OS=Rhodopseudomonas palu... [more]
RRF_RHOOB9.234e-3040.69Ribosome-recycling factor OS=Rhodococcus opacus (s... [more]
RRF_NITEC9.234e-3041.73Ribosome-recycling factor OS=Nitrosomonas eutropha... [more]
RRF_MYCUA9.234e-3041.38Ribosome-recycling factor OS=Mycobacterium ulceran... [more]
RRF_MYCMM9.234e-3041.38Ribosome-recycling factor OS=Mycobacterium marinum... [more]
RRF_MESFL9.234e-3044.14Ribosome-recycling factor OS=Mesoplasma florum GN=... [more]
RRF_CHLSY9.234e-3044.76Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_CHLAA9.234e-3044.76Ribosome-recycling factor OS=Chloroflexus aurantia... [more]
RRF_AZOSB9.234e-3045.07Ribosome-recycling factor OS=Azoarcus sp. (strain ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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