CF832536
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOPT (Ribosome-recycling factor OS=Rhodopseudomonas palustris (strain TIE-1) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 62/139 (44.60%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ML+ ++V+ YGS + L +A ++ P+ + +Q +DKS +K++EK IV S+LG++P +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ K L ++QK TD + +ID + Sbjct: 37 MLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOPA (Ribosome-recycling factor OS=Rhodopseudomonas palustris GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 62/139 (44.60%), Postives = 97/139 (69.78%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ML+ ++V+ YGS + L +A ++ P+ + +Q +DKS +K++EK IV S+LG++P +G+VIRL +P+L ERRKEL KV K AE +VAVR++RRD L +KL+K ++SED+ K L ++QK TD + +ID + Sbjct: 37 MLEPVQVDAYGSHMPLNQVATVSVPEPRLISVQVWDKSMVKAVEKGIVDSNLGLSPATEGQVIRLRIPELNEERRKELVKVAHKYAEAARVAVRHVRRDGLDTIKKLEKAHEISEDDQKRLDQEVQKATDAAIAEIDQL 175
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RHOOB (Ribosome-recycling factor OS=Rhodococcus opacus (strain B4) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 59/145 (40.69%), Postives = 97/145 (66.90%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M ++I ++YYG+ + +A IN P++ ++++PY+ S L +IE AI +SDLG+ P+NDG +IR+++PQLT ERR+EL K + E+ KV+VRN+RR A+ ++QK+ + ED V +L K T Y+ ++D + K Sbjct: 32 ANPGMFNRIGIDYYGAFTPITQLASINVPEARLVVVKPYEASQLNAIETAIRNSDLGVNPSNDGNLIRISVPQLTEERRRELVKQAKSKGEDAKVSVRNVRRKAMDELSRIQKDGEAGEDEVGRAEKELDKTTARYVAQVDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_NITEC (Ribosome-recycling factor OS=Nitrosomonas eutropha (strain C91) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 58/139 (41.73%), Postives = 96/139 (69.06%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 +LD I V+YYG+P ++ +A + D+ ++ + P+DK + +IEKAI SD+G+ P GE++R+ +P LT ERRK+L+K+V +AE ++A+RNIRRDA ++L K+K ++ED + D+QKLTD Y+ ++D + Sbjct: 36 LLDHITVDYYGTPTPIRQLANVTLADARTIGVIPWDKKAFSAIEKAIRDSDMGLNPMTAGEMVRVPMPPLTEERRKDLTKIVRTEAETARIAMRNIRRDANTQLKELLKDKLIAEDEDRRAQDDIQKLTDRYIAEVDKL 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCUA (Ribosome-recycling factor OS=Mycobacterium ulcerans (strain Agy99) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR++L K + EE +V+VRNIRR A++ +++K+ + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MYCMM (Ribosome-recycling factor OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 60/145 (41.38%), Postives = 96/145 (66.21%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 +NP M +I ++YYG+ + +A IN P++ ++I+PY+ + L +IE AI +SDLG+ P NDG +IR+ +PQLT ERR++L K + EE +V+VRNIRR A++ +++K+ + ED V DL K T +Y+ +ID + K Sbjct: 32 ANPGMFSRIVIDYYGTHTPITQLASINVPEARMVVIKPYEANQLHAIETAIRNSDLGVNPTNDGTIIRVAVPQLTEERRRDLVKQAKHKGEEARVSVRNIRRKAMEELHRIRKDGEAGEDEVARAEKDLDKSTHQYVAQIDELVK 176
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_MESFL (Ribosome-recycling factor OS=Mesoplasma florum GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 64/145 (44.14%), Postives = 99/145 (68.28%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437 ++ MLDK+ V YYG+P + AQI+TP+ L+I+P+DK+ ++ + AI SDL + P +D EV+R+ +P LT E RK+L K + K+ E KV +RNIRRD++ + +K+K +SED VK + +D+QKLTD +K++D I K Sbjct: 31 ASATMLDKVMVNYYGTPTPVNQTAQISTPEPQLLVIKPWDKTLIQEVVAAINKSDLNLNPVSDAEVVRINIPALTEEIRKDLVKKMNKELENFKVRIRNIRRDSI---DTAKKDKSISEDVVKGIETDIQKLTDSSIKQLDEISK 172
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CHLSY (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ++ +++ + VE YG + L +A I+ P+ ++IQPYD + +K+IEKAI SDLG+ P+NDG VIRL +P LT ERR+EL K+V + EE K++VRN RRDA+ +KL+ EK +SED + +Q+LTD +++D I Sbjct: 32 ASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CHLAA (Ribosome-recycling factor OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 64/143 (44.76%), Postives = 97/143 (67.83%), Query Frame = 3 Query: 3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431 ++ +++ + VE YG + L +A I+ P+ ++IQPYD + +K+IEKAI SDLG+ P+NDG VIRL +P LT ERR+EL K+V + EE K++VRN RRDA+ +KL+ EK +SED + +Q+LTD +++D I Sbjct: 32 ASSALVEHLHVEAYGMTMPLNQLANISVPEPRLIVIQPYDANMIKAIEKAIQQSDLGLNPSNDGRVIRLPVPPLTEERRRELVKMVRHRVEEVKISVRNQRRDAIDDLKKLEAEKLISEDELHRGQERIQQLTDRCTRELDQI 174
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_AZOSB (Ribosome-recycling factor OS=Azoarcus sp. (strain BH72) GN=frr PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 9.234e-30 Identity = 64/142 (45.07%), Postives = 96/142 (67.61%), Query Frame = 3 Query: 15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440 +LD + VEYYGS V + +A I D+ ++ +Q ++K L +EKAI DLG+ P N GE+IR+ +P LT ERR++L+KVV ++ E KVAVRN+RRDA + + K+K +SED+ + D+QKLTD+Y+ +ID + Q Sbjct: 36 LLDHVMVEYYGSMVPINQVANITLIDARTIGVQTWEKPMLGKVEKAIRDCDLGLNPANMGEIIRVPMPALTEERRRDLTKVVRQEGETAKVAVRNLRRDANQHLKDAVKDKTISEDDERRSQDDIQKLTDKYVAEIDKLLAQ 177 The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bpback to top |