CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_ANATD (Ribosome-recycling factor OS=Anaerocellum thermophilum (strain DSM 6725 / Z-1320) GN=frr PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.136e-38
Identity = 73/143 (51.05%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  SDLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+AL  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:   31 ANPHILDKVMVDYYGVPTPIPQVASITVPEARMIVIQPWEARMLKEIEKAIQKSDLGVNPTNDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREALDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_HELMI (Ribosome-recycling factor OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=frr PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.401e-38
Identity = 74/143 (51.75%), Postives = 107/143 (74.83%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +L+K+ VEYYG+P  +  +A I+ P++  L+IQP+DKS L ++EKAI+ SDLG+TP +DG VIRL +PQLT ERR EL K V K+AEE +V +RN+RRDA +  + LQKE  +SED  K    ++QKLTD+Y++++D +
Sbjct:   32 ANPALLEKVTVEYYGAPTPVNQLANISAPEARLLVIQPWDKSVLPALEKAILKSDLGLTPTSDGAVIRLVIPQLTQERRSELVKTVKKRAEEHRVILRNLRRDANEDVKDLQKEHIISEDEGKRAQEEIQKLTDKYIREVDQV 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_EUBR3 (Ribosome-recycling factor OS=Eubacterium rectale (strain ATCC 33656 / VPI 0990) GN=frr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 72/142 (50.70%), Postives = 107/142 (75.35%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +NP +LDK+ V+YYG+P  ++S+A ++ P+   + IQP++ S +K IEKAI  SD+G+ P NDG++IRL  P+LT ERRK+L+K + K+ EE KVAVRNIRRDA+ + +K  KE+ +SED +K L  D QKLTD+++ K+D+
Sbjct:   31 ANPHILDKLRVDYYGTPSPIQSVANVSVPEPRMIQIQPWEASMVKEIEKAINCSDIGINPTNDGKLIRLVFPELTEERRKDLAKDIKKKGEEAKVAVRNIRRDAIDSIKKTGKEEGISEDEIKGLEDDAQKLTDKFVAKVDA 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOPH (Ribosome-recycling factor OS=Clostridium phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg) GN=frr PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.054e-38
Identity = 70/143 (48.95%), Postives = 110/143 (76.92%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LDK+ V+YYG+P +++++A ++ P++  + IQP++   +K IEKAI++SDLG+TP+NDG+VIRL  P+LT ERRK+L K V K+AE  KVAVRN+RRDA  A +KL K  ++SED  K +  ++QK+TD+++ ++D +
Sbjct:   31 ANPHLLDKLRVDYYGTPSAIQAVANVSVPEARVIQIQPWEAKLIKEIEKAIIASDLGLTPSNDGKVIRLVFPELTEERRKDLVKDVKKKAENTKVAVRNVRRDANDAIKKLAKANEISEDEQKQIEDEIQKITDKFITEVDKV 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRPM (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M28 GN=frr PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 9.213e-38
Identity = 74/141 (52.48%), Postives = 105/141 (74.47%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK+TD+ +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKVTDDAIKEID 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACDB (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=frr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 76/143 (53.15%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG P  L  +A I  P+   L+I PYDKSSL  IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVRN+R++A+KA +K +K+ +++ED  + L  ++QK+TDE  KKID +
Sbjct:   32 ANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITPYDKSSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOAB (Ribosome-recycling factor OS=Clostridium acetobutylicum GN=frr PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.203e-37
Identity = 74/143 (51.75%), Postives = 105/143 (73.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+IEV+YYG+   L  +A I+ P+S  L+IQP+DKS++KSIEKAI+ SDLG+ P+NDG  +RL +P+LT E RK + K V K  E+GKVA+R IRRDA    + L+K+  ++ED +K   +D+QK TD Y+K+ID +
Sbjct:   32 ANPAMLDRIEVDYYGTMTPLNQLANISVPESRVLMIQPWDKSAMKSIEKAILISDLGLNPSNDGTTMRLVIPELTEETRKNIVKNVKKAGEDGKVALRAIRRDANDKVKSLKKDNSITEDEMKSAENDIQKKTDSYVKEIDKM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRU0 (Ribosome-recycling factor OS=Streptococcus uberis (strain ATCC BAA-854 / 0140J) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 76/143 (53.15%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I+VEYYG P  L  +A I  P++  LLI P+DKSS+K IE+AI +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGVPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENQKIAIRNIRRDAMDEAKKQEKNKEITEDELKALEKDIQKATDQAIKHIDGM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRS7 (Ribosome-recycling factor OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  KV++RNIRRDA+   +K +K K+++ED +K L  D+QK TDE +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEID 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRPZ (Ribosome-recycling factor OS=Streptococcus pyogenes serotype M49 (strain NZ131) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 74/141 (52.48%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +K K+++ED +K L  D+QK TD+ +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDDAKKQEKAKEITEDELKTLEKDIQKATDDAIKEID 172          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_ANATD4.136e-3851.05Ribosome-recycling factor OS=Anaerocellum thermoph... [more]
RRF_HELMI5.401e-3851.75Ribosome-recycling factor OS=Heliobacterium modest... [more]
RRF_EUBR37.054e-3850.70Ribosome-recycling factor OS=Eubacterium rectale (... [more]
RRF_CLOPH7.054e-3848.95Ribosome-recycling factor OS=Clostridium phytoferm... [more]
RRF_STRPM9.213e-3852.48Ribosome-recycling factor OS=Streptococcus pyogene... [more]
RRF_LACDB1.203e-3753.15Ribosome-recycling factor OS=Lactobacillus delbrue... [more]
RRF_CLOAB1.203e-3751.75Ribosome-recycling factor OS=Clostridium acetobuty... [more]
RRF_STRU01.571e-3753.15Ribosome-recycling factor OS=Streptococcus uberis ... [more]
RRF_STRS71.571e-3753.19Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_STRPZ1.571e-3752.48Ribosome-recycling factor OS=Streptococcus pyogene... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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