CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRE4 (Ribosome-recycling factor OS=Streptococcus equi subsp. equi (strain 4047) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 75/141 (53.19%), Postives = 104/141 (73.76%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I+V+YYG+P  L  +A I  P++  LLI P+DKSS+K IE+A+ +SDLG+TP NDG VIRL +P LT E RKEL+K V K  E  KV++RNIRRDA+   +K +K K+++ED +K L  D+QK TDE +K+ID
Sbjct:   32 ANASLLDRIQVDYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERALNASDLGITPANDGSVIRLVIPALTEETRKELAKEVKKVGETAKVSIRNIRRDAMDEAKKQEKAKEITEDELKALEKDIQKATDEAVKEID 172          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACCR (Ribosome-recycling factor OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 73/145 (50.34%), Postives = 107/145 (73.79%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +N  +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACC7 (Ribosome-recycling factor OS=Bacillus cereus (strain AH187) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 73/145 (50.34%), Postives = 107/145 (73.79%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +N  +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACC4 (Ribosome-recycling factor OS=Bacillus cereus (strain B4264) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 73/145 (50.34%), Postives = 107/145 (73.79%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +N  +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACC1 (Ribosome-recycling factor OS=Bacillus cereus (strain ATCC 10987) GN=frr PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.571e-37
Identity = 73/145 (50.34%), Postives = 107/145 (73.79%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +N  +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   32 ANASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOBK (Ribosome-recycling factor OS=Clostridium botulinum (strain Okra / Type B1) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOBJ (Ribosome-recycling factor OS=Clostridium botulinum (strain Kyoto / Type A2) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOB6 (Ribosome-recycling factor OS=Clostridium botulinum (strain 657 / Type Ba4) GN=frr PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.052e-37
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISVPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_THEPX (Ribosome-recycling factor OS=Thermoanaerobacter sp. (strain X514) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD+I V+YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL  P+LT ERRKEL K+V K+AEE KVAVR IRRDA  A +K++K  ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:   31 ANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKV 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_THEP3 (Ribosome-recycling factor OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 75/143 (52.45%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LD+I V+YYG+P  L  +A I  P+   L++QP+D S +  IEKAI  SDLG+ P +DG+V+RL  P+LT ERRKEL K+V K+AEE KVAVR IRRDA  A +K++K  ++SED  K    ++QKLTD+Y+K+ID +
Sbjct:   31 ANPALLDRIMVDYYGTPTPLNRLATITAPEPRVLVVQPWDVSKISDIEKAIQKSDLGINPVSDGKVLRLVFPELTEERRKELVKLVHKKAEEAKVAVRQIRRDANDAVKKMEKNGEISEDERKKREEEIQKLTDKYIKEIDKV 173          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRE41.571e-3753.19Ribosome-recycling factor OS=Streptococcus equi su... [more]
RRF_BACCR1.571e-3750.34Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC71.571e-3750.34Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC41.571e-3750.34Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC11.571e-3750.34Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_CLOBK2.052e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOBJ2.052e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CLOB62.052e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_THEPX2.681e-3752.45Ribosome-recycling factor OS=Thermoanaerobacter sp... [more]
RRF_THEP32.681e-3752.45Ribosome-recycling factor OS=Thermoanaerobacter ps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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