CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_LACDA (Ribosome-recycling factor OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 75/143 (52.45%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD++ VEYYG P  L  +A I  P+   L+I PYDK+SL  IE AI++SDLG+TP NDG VIRL +PQLT ERR+E++K V K AEE K+AVRN+R++A+KA +K +K+ +++ED  + L  ++QK+TDE  KKID +
Sbjct:   32 ANASLLDRVMVEYYGVPTPLVQMAGITIPEPRVLMITPYDKTSLNDIEHAILASDLGLTPANDGNVIRLIIPQLTGERRQEIAKEVGKLAEEAKIAVRNVRQEAMKALKKQEKDGEITEDEERRLEKEVQKVTDESTKKIDQM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_DESVM (Ribosome-recycling factor OS=Desulfovibrio vulgaris (strain Miyazaki F / DSM 19637) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 71/137 (51.82%), Postives = 105/137 (76.64%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            ++D I+V+YYG+P  +  +A ++ PDS +L IQP+D+S+ + +EKAI+ SDLG+ P NDG++IR+++P LT ERRK+L KV  K  EE KVAVRN+RRDA  A +KL+K K++SED+V+  + D+QKLTD ++ K D
Sbjct:   37 LVDNIKVDYYGTPTPISQLASVSVPDSRTLTIQPWDRSAFQLVEKAIMKSDLGLNPVNDGKIIRISIPPLTEERRKDLVKVARKYTEEAKVAVRNVRRDANDALKKLEKGKEISEDDVRKSTDDVQKLTDRFVAKSD 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOBL (Ribosome-recycling factor OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=frr PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.681e-37
Identity = 77/143 (53.85%), Postives = 104/143 (72.73%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+IE EYYGS   L  +  I+ P++  LLIQP+DKS+L +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIEAEYYGSMTPLNQLGNISIPEARVLLIQPWDKSALSAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEEAKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKAEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRTD (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 75/143 (52.45%), Postives = 101/143 (70.63%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:   32 ANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRT2 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 75/143 (52.45%), Postives = 101/143 (70.63%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:   32 ANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRT1 (Ribosome-recycling factor OS=Streptococcus thermophilus (strain CNRZ 1066) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 75/143 (52.45%), Postives = 101/143 (70.63%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I VEYYG+P  L  +A I  P++  LLI P+DK S+  IE+AI  SDLG+ P NDG VIRL +P LT E RKEL+K V K  E  K+A+RNIRRDA+   +K +KEK+++ED +K L  D+QK TD+ + KIDS+
Sbjct:   32 ANASLLDRITVEYYGAPTPLNQLASITVPEARVLLISPFDKGSIADIERAINESDLGINPANDGSVIRLVIPALTEETRKELAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKEKEITEDQLKTLEKDIQKATDDAVNKIDSM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CLOBM (Ribosome-recycling factor OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 77/143 (53.85%), Postives = 105/143 (73.43%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP MLD+I+ EYYGS   L  +A I+ P++  LLIQP+DKSS+ +IEKAI+ SDLG+ P+NDG VIRL +P+LT E RK + K V K  EE KVA+R+IRRD     + L+K+  +SED++K    D+QK TD+Y+K+IDSI
Sbjct:   32 ANPAMLDRIDAEYYGSMTPLNQLANISVPEARVLLIQPWDKSSMGAIEKAILKSDLGLNPSNDGTVIRLVIPELTEETRKNIVKTVKKTGEETKVAIRSIRRDCNDDVKNLKKD-DVSEDDIKKTEDDIQKKTDKYIKEIDSI 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_CALS8 (Ribosome-recycling factor OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 71/143 (49.65%), Postives = 106/143 (74.13%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +NP +LDK+ V+YYG P  +  +A I  P++  ++IQP++   LK IEKAI  +DLG+ P NDG+VIRL  P+LT ERRKEL K V K AE+ KVA+RNIRR+A+  Y+K++K  +++ED++KD   D+QKL D+Y+++I+ +
Sbjct:   31 ANPHILDKVMVDYYGVPTPIPQLASITVPEARMIVIQPWEARMLKEIEKAIQKADLGVNPANDGKVIRLIFPELTEERRKELVKQVKKMAEDAKVAIRNIRREAIDEYKKMKKNNEITEDDLKDAEEDVQKLHDKYIEQIEKL 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACCN (Ribosome-recycling factor OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=frr PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.501e-37
Identity = 71/141 (50.35%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR+EL KVV K AE+ KVA+RN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   36 ILDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGSVIRIAFPALTEERRRELVKVVKKYAEDAKVAIRNVRRDGNDELKKLEKAGEMTEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_SYNSC (Ribosome-recycling factor OS=Synechococcus sp. (strain CC9605) GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 73/141 (51.77%), Postives = 105/141 (74.47%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +N  +LD+I VEYYG+   LKS+A ++TPDS ++ IQP+D S+L SIEKAI  S+LG TPNNDG++IR+ +P LT ERRKE  K+ +K AEEGKVA+RN+RRDA+   +K +KE + SED  +D    +QK  D+++ +++
Sbjct:   29 ANSSLLDRISVEYYGAETPLKSLATLSTPDSQTIQIQPFDISALASIEKAIAMSELGFTPNNDGKIIRINVPPLTEERRKEFCKLASKYAEEGKVALRNLRRDAIDKIKKQEKEGEFSEDQSRDEQDGVQKTLDKFIAELE 169          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_LACDA2.681e-3752.45Ribosome-recycling factor OS=Lactobacillus delbrue... [more]
RRF_DESVM2.681e-3751.82Ribosome-recycling factor OS=Desulfovibrio vulgari... [more]
RRF_CLOBL2.681e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_STRTD3.501e-3752.45Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT23.501e-3752.45Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_STRT13.501e-3752.45Ribosome-recycling factor OS=Streptococcus thermop... [more]
RRF_CLOBM3.501e-3753.85Ribosome-recycling factor OS=Clostridium botulinum... [more]
RRF_CALS83.501e-3749.65Ribosome-recycling factor OS=Caldicellulosiruptor ... [more]
RRF_BACCN3.501e-3750.35Ribosome-recycling factor OS=Bacillus cereus subsp... [more]
RRF_SYNSC4.572e-3751.77Ribosome-recycling factor OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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