CF832536

Overview
NameCF832536
Unique NameCF832536
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length651
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRA5 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype V GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRA3 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype III GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_STRA1 (Ribosome-recycling factor OS=Streptococcus agalactiae serotype Ia GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 73/143 (51.05%), Postives = 103/143 (72.03%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSI 431
            +N  +LD+I+VEYYG+P  L  +A I  P++  LLI P+DKSS+K IE+AI  SDLG+ P NDG VIRL +P LT E R++L+K V K  E  K+A+RNIRRDA+   +K +K K+++ED++K L  D+QK TD+ +K ID +
Sbjct:   32 ANASLLDRIQVEYYGAPTPLNQLASITVPEARVLLISPFDKSSIKDIERAINESDLGINPANDGSVIRLVIPALTEETRRDLAKEVKKVGENAKIAIRNIRRDAMDEAKKQEKNKEITEDDLKSLEKDIQKATDDAVKHIDEM 174          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_RUBXD (Ribosome-recycling factor OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 72/141 (51.06%), Postives = 107/141 (75.89%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKID 425
            +NP +LD+IEVE YG+ + +KS+A I  P+   L I PYD + LK+IE+AI  SDLG+ P NDG++IRL +P+LT ERR+EL ++V   AEEG+V+VRN+RRD +   ++L++E ++SED+ +   ++LQKLTD Y+K+ID
Sbjct:   33 ANPALLDRIEVEAYGTRMPIKSVASIGAPEPRLLTITPYDPNLLKTIERAIRDSDLGLNPQNDGKIIRLPIPELTEERRRELIRLVRHMAEEGRVSVRNVRRDEMHDIQRLRREGEISEDDERRAEAELQKLTDAYIKRID 173          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_PROMP (Ribosome-recycling factor OS=Prochlorococcus marinus subsp. pastoris (strain CCMP1986 / MED4) GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 77/142 (54.23%), Postives = 108/142 (76.06%), Query Frame = 3
Query:    3 SNPVMLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDS 428
            +N  +LD+I VEYYG+   +KS+A I+T DS ++ IQP+D SSL++IEKAI  SDLG+TPNNDG+VIR+ +P LT ERRKE  K+ +K AEEGKVA+RNIRRDA+   +K +KE  +S+D  +D   ++QK TD+Y+  I++
Sbjct:   29 ANASLLDRISVEYYGAETPIKSLASISTIDSQTISIQPFDISSLQTIEKAISVSDLGITPNNDGKVIRINVPPLTEERRKEFCKLASKYAEEGKVALRNIRRDAVDKEKKDEKEGLISKDVSRDNQLEIQKFTDKYISLIET 170          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BDEBA (Ribosome-recycling factor OS=Bdellovibrio bacteriovorus GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 76/142 (53.52%), Postives = 104/142 (73.24%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYKQ 440
            MLD I V YYG+P  L  +A I+TPD+ S LI P++ + LK IE+AI+ S+LGM P NDG+VIRL +P LT ERRK+L+K V K AEE +VAVR  RRDA    +KLQK+K +SED  K   +D+QK+TD+++KK+D + ++
Sbjct:   37 MLDGIRVNYYGTPSPLSQVASISTPDAKSFLIAPWEVAILKDIEQAIIKSELGMAPMNDGKVIRLKVPDLTEERRKDLAKQVKKIAEEARVAVRMARRDANDEVKKLQKDKAVSEDEGKKAEADIQKVTDDFIKKVDQVAEE 178          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACHK (Ribosome-recycling factor OS=Bacillus thuringiensis subsp. konkukian GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   36 VLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACCZ (Ribosome-recycling factor OS=Bacillus cereus (strain ZK / E33L) GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   36 VLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACC3 (Ribosome-recycling factor OS=Bacillus cereus (strain 03BB102) GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   36 VLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
BLAST of CF832536 vs. ExPASy Swiss-Prot
Match: RRF_BACC2 (Ribosome-recycling factor OS=Bacillus cereus (strain G9842) GN=frr PE=3 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.572e-37
Identity = 72/141 (51.06%), Postives = 105/141 (74.47%), Query Frame = 3
Query:   15 MLDKIEVEYYGSPVSLKSIAQINTPDSSSLLIQPYDKSSLKSIEKAIVSSDLGMTPNNDGEVIRLTLPQLTSERRKELSKVVAKQAEEGKVAVRNIRRDALKAYEKLQKEKKLSEDNVKDLSSDLQKLTDEYMKKIDSIYK 437
            +LDK++V+YYG+P  +  +A I  P++  L+IQPYDK+S+  IEKAI+ +DLG+ P+NDG VIR+  P LT ERR++L KVV K AEE KVAVRN+RRD     +KL+K  +++ED+++  + D+QK TD+Y+ K+D I K
Sbjct:   36 VLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIEKAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTEDIQKETDKYIAKVDEIAK 176          
The following BLAST results are available for this feature:
BLAST of CF832536 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RRF_STRA54.572e-3751.05Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_STRA34.572e-3751.05Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_STRA14.572e-3751.05Ribosome-recycling factor OS=Streptococcus agalact... [more]
RRF_RUBXD4.572e-3751.06Ribosome-recycling factor OS=Rubrobacter xylanophi... [more]
RRF_PROMP4.572e-3754.23Ribosome-recycling factor OS=Prochlorococcus marin... [more]
RRF_BDEBA4.572e-3753.52Ribosome-recycling factor OS=Bdellovibrio bacterio... [more]
RRF_BACHK4.572e-3751.06Ribosome-recycling factor OS=Bacillus thuringiensi... [more]
RRF_BACCZ4.572e-3751.06Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC34.572e-3751.06Ribosome-recycling factor OS=Bacillus cereus (stra... [more]
RRF_BACC24.572e-3751.06Ribosome-recycling factor OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02A06_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832536 ID=CF832536; Name=CF832536; organism=Citrus sinensis; type=EST; length=651bp
GATCGAATCCAGTTATGCTAGATAAGATTGAGGTGGAATACTATGGAAGC
CCAGTAAGTTTGAAGAGCATAGCTCAAATCAATACCCCTGATTCAAGTTC
TCTATTGATTCAACCATATGACAAATCCAGCTTAAAGTCTATAGAGAAGG
CCATAGTGAGCTCTGATCTTGGCATGACCCCAAACAATGATGGTGAAGTC
ATACGGTTAACCCTTCCTCAATTGACATCCGAAAGGAGGAAGGAACTGTC
AAAGGTTGTGGCCAAACAGGCTGAAGAAGGGAAGGTGGCAGTTAGGAATA
TAAGAAGAGATGCGTTAAAAGCTTATGAAAAACTTCAGAAGGAGAAGAAG
CTCTCTGAAGACAATGTGAAGGACTTGTCAAGTGATTTACAGAAACTAAC
AGATGAGTATATGAAGAAGATTGATAGCATCTACAAACAGAAAGAGAAGG
AGTTGTTGAAGGTTTAATGATTGTTTACACACAAATGTAATGGTGAGCTC
TCTAGTGAATCTCAGAATGCACTCTTTATTTTTTGGTTTGCCCATAGAAT
GGCATTTTTTGATACTAATGGGAGACACGGGTGGATATTTTGTTATGAAA
TGAAATGTGGAAATTAGTTATTCTAGACTCTTTGTAAAAAAAAAAAAAAA
A
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