CF832680

Overview
NameCF832680
Unique NameCF832680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:176..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX2_HUMAN (Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=GLRX2 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.913e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            QET+S N VV+FSKT C +C   K+LF  + V +K +ELD    G+  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   61 QETISDNCVVIFSKTSCSYCTMAKKLFHDMNVNYKVVELDLLEYGNQFQDALYKMTGERTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 150          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX2_PONAB (Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=GLRX2 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.262e-20
Identity = 44/90 (48.89%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            QET+S N VV+FSKT C +C   K+LF+ + V +K +ELD    G+  Q AL + TG +TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   58 QETISDNCVVIFSKTSCSYCTMAKKLFRDMNVNYKVVELDLLEYGNQFQDALYKMTGGRTVPRIFVNGTFIGGATDTHRLHKEGKLLPLV 147          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX2_RAT (Glutaredoxin-2, mitochondrial OS=Rattus norvegicus GN=Glrx2 PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 7.270e-20
Identity = 43/90 (47.78%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            QET+S+N VV+FSK+ C +C   K++F  + V +K +ELD    GS  Q AL + TG++TVP +F+ G  IGG   T  LH+EGKL+PL+
Sbjct:   54 QETISNNCVVIFSKSSCSYCSMAKKIFHDMNVNYKVVELDMVEYGSQFQEALYKMTGERTVPRIFVNGIFIGGAADTHRLHKEGKLLPLV 143          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRS12_ARATH (Monothiol glutaredoxin-S12, chloroplastic OS=Arabidopsis thaliana GN=GRXS12 PE=1 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 9.495e-20
Identity = 50/92 (54.35%), Postives = 63/92 (68.48%), Query Frame = 1
Query:   85 TVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 357
            TV+ N VVV+SKT C +   VK LF+ L V    +ELD+  S+GS +Q+ L + TGQ TVPNVFIGGKHIGGC  T  LH +G+L  +L EA
Sbjct:   81 TVAENPVVVYSKTWCSYSSQVKSLFKSLQVEPLVVELDQLGSEGSQLQNVLEKITGQYTVPNVFIGGKHIGGCSDTLQLHNKGELEAILAEA 172          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRS10_ORYSJ (Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. japonica GN=GRXS10 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 1.240e-19
Identity = 46/93 (49.46%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDK-ESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 354
            + T++ N VV++SK+ C + + VK LF+++GV    IELD+  + G  +Q  L   TGQ TVPNVFIGGKHIGGC  T  LHR+G+L  +L+E
Sbjct:   64 KRTLADNPVVIYSKSWCSYSMEVKALFKRIGVQPHVIELDQLGAQGPQLQKVLERLTGQSTVPNVFIGGKHIGGCTDTVKLHRKGELATMLSE 156          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: TRXR3_MOUSE (Thioredoxin reductase 3 (Fragment) OS=Mus musculus GN=Txnrd3 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 2.763e-19
Identity = 42/97 (43.30%), Postives = 60/97 (61.86%), Query Frame = 1
Query:   73 KAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGA 363
            + ++ +  N V++FSK+ CP    VKELF  LGV +  +ELD+  DG+ +Q  L E + QKTVPN+F+   H+GGCD T   H+ G L  LL +  A
Sbjct:  112 RLRDLIEGNRVMIFSKSYCPHSTRVKELFSSLGVVYNILELDQVDDGASVQEVLTEISNQKTVPNIFVNKVHVGGCDRTFQAHQNGLLQKLLQDDSA 208          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC5_ARATH (Glutaredoxin-C5, chloroplastic OS=Arabidopsis thaliana GN=GRXC5 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 3.608e-19
Identity = 47/94 (50.00%), Postives = 63/94 (67.02%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKES-DGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEA 357
            ++TV+ N+VV++SKT C +C  VK LF++LGV    +ELD+    G  +Q  L   TGQ TVPNVF+ GKHIGGC  T  L+R+G L  +L EA
Sbjct:   74 RKTVTENTVVIYSKTWCSYCTEVKTLFKRLGVQPLVVELDQLGPQGPQLQKVLERLTGQHTVPNVFVCGKHIGGCTDTVKLNRKGDLELMLAEA 167          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC4_ARATH (Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 8.038e-19
Identity = 42/94 (44.68%), Postives = 62/94 (65.96%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAG 360
            ++T+SS+ +V+FSK+ CP+C   K +F++L      +ELD+  DG  IQ+AL E  G++TVP VFI GKH+GG D T   +  G+L  LL  +G
Sbjct:   36 KKTISSHKIVIFSKSYCPYCKKAKSVFRELDQVPYVVELDEREDGWSIQTALGEIVGRRTVPQVFINGKHLGGSDDTVDAYESGELAKLLGVSG 129          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: TRXR3_HUMAN (Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 6.805e-18
Identity = 42/89 (47.19%), Postives = 56/89 (62.92%), Query Frame = 1
Query:   88 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 354
            +  + VV+FSK+ CP    VKELF  LGV    +ELD+  DG+ +Q  L+E T QKTVPN+F+   H+GGCD T   ++ G L  LL E
Sbjct:  174 IERSRVVIFSKSYCPHSTRVKELFSSLGVECNVLELDQVDDGARVQEVLSEITNQKTVPNIFVNKVHVGGCDQTFQAYQSGLLQKLLQE 262          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC3_ARATH (Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.760e-17
Identity = 41/90 (45.56%), Postives = 55/90 (61.11%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            Q  + SN +V+FSK+ CP+C+  K +F QL      +ELD+  DG  IQ  L E+ G++TVP VF+ GKHIGG D   A    G+L  LL
Sbjct:   38 QNAILSNKIVIFSKSYCPYCLRSKRIFSQLKEEPFVVELDQREDGDQIQYELLEFVGRRTVPQVFVNGKHIGGSDDLGAALESGQLQKLL 127          
The following BLAST results are available for this feature:
BLAST of CF832680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GLRX2_HUMAN1.913e-2048.89Glutaredoxin-2, mitochondrial OS=Homo sapiens GN=G... [more]
GLRX2_PONAB4.262e-2048.89Glutaredoxin-2, mitochondrial OS=Pongo abelii GN=G... [more]
GLRX2_RAT7.270e-2047.78Glutaredoxin-2, mitochondrial OS=Rattus norvegicus... [more]
GRS12_ARATH9.495e-2054.35Monothiol glutaredoxin-S12, chloroplastic OS=Arabi... [more]
GRS10_ORYSJ1.240e-1949.46Monothiol glutaredoxin-S10 OS=Oryza sativa subsp. ... [more]
TRXR3_MOUSE2.763e-1943.30Thioredoxin reductase 3 (Fragment) OS=Mus musculus... [more]
GRXC5_ARATH3.608e-1950.00Glutaredoxin-C5, chloroplastic OS=Arabidopsis thal... [more]
GRXC4_ARATH8.038e-1944.68Glutaredoxin-C4 OS=Arabidopsis thaliana GN=GRXC4 P... [more]
TRXR3_HUMAN6.805e-1847.19Thioredoxin reductase 3 OS=Homo sapiens GN=TXNRD3 ... [more]
GRXC3_ARATH5.760e-1745.56Glutaredoxin-C3 OS=Arabidopsis thaliana GN=GRXC3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832680 ID=CF832680; Name=CF832680; organism=Citrus sinensis; type=EST; length=525bp
GGATTTGAAGCTCATTTAGGGTTTGTGAGATTTCGAATCAAAGACAAAGA
AGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGTTTCCTCCAATT
CCGTCGTCGTTTTCAGCAAAACGCTTTGTCCGTTCTGCGTGAGTGTCAAA
GAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATTGAACTGGACAA
AGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACTGGAC
AGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGGCTGC
GATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCAC
TGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGCTATTCTCT
GCCTGTTTATGCTAGTAATAAATAAACAATGTGTTGGTAGTGCTTAATCT
GTCTGAATTAAATATGAAATTATGCTTATTTGAGTAATTTCCAATGCACT
TTTTTGTTCAAAAAAAAAAAAAAAA
back to top