CF832680

Overview
NameCF832680
Unique NameCF832680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:176..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC8_ORYSJ (Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN=GRXC8 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 7.523e-17
Identity = 40/92 (43.48%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFK--AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            + TV ++ VV+FSK+ CP+C   K +F++L +  +   +ELD+  DG +IQ AL++  G++TVP VF+ GKH+GG D T   +  GKL  LL
Sbjct:   37 KSTVKAHDVVIFSKSYCPYCRRAKAVFKELELKKEPYVVELDQREDGWEIQDALSDMVGRRTVPQVFVHGKHLGGSDDTVEAYESGKLAKLL 128          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC2_ORYSJ (Putative glutaredoxin-C2 OS=Oryza sativa subsp. japonica GN=GRXC2 PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 2.859e-16
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   91 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQ-KTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            S  +VV+F  + C  C  VK LF +LGV++   E+DK+ +G D++ ALA   G+   VP VFIGGK +G  D   +LH  GKLVPLL EAGA+
Sbjct:   10 SQRAVVIFGASNCFMCHVVKTLFSELGVSWAVHEVDKDPNGKDVERALAGMVGRTPPVPAVFIGGKLVGPTDQVMSLHLAGKLVPLLREAGAL 102          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXS6_ORYSJ (Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. japonica GN=GRXS6 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 38/90 (42.22%), Postives = 53/90 (58.89%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            Q  + SN + +FSKT CP+ +  K +F+ L      +ELD   DG +IQS L +  G+ TVP VF+ G+H+GG D T   H  G+L  LL
Sbjct:   35 QNAIYSNRITIFSKTYCPYSMRAKRIFRDLKENPYIVELDLREDGREIQSVLLDLVGRHTVPQVFVNGQHVGGSDDTANAHSNGQLQKLL 124          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX2_YEAST (Glutaredoxin-2, mitochondrial OS=Saccharomyces cerevisiae GN=GRX2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 6.369e-16
Identity = 46/111 (41.44%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   28 RFRIKDKEDTEMALPKAQETVSSNSVVVFSKTLCPFC-VSVKELFQQLGVTFK---AIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            RF    K  ++  +   ++ +    V V +KT CP+C  ++  LFQ+L V       +ELD+ S+GS+IQ AL E +GQKTVPNV+I GKHIGG      L + GKL  +L
Sbjct:   28 RFLSTPKMVSQETVAHVKDLIGQKEVFVAAKTYCPYCKATLSTLFQELNVPKSKALVLELDEMSNGSEIQDALEEISGQKTVPNVYINGKHIGGNSDLETLKKNGKLAEIL 138          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX2_SCHPO (Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 7.042e-15
Identity = 40/100 (40.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   55 TEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTE 354
            T +A    ++ +S+N V VFSK+ CPFC + K    +    +KA ELDK  +GSDIQ+ L E T Q TVP++F   + IGG      L   G L  ++ E
Sbjct:    2 TSIAKAFVEKAISNNPVTVFSKSFCPFCKAAKNTLTKYSAPYKAYELDKIENGSDIQAYLHEKTKQSTVPSIFFRNQFIGGNSDLNKLRSSGTLTKMIAE 101          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXS3_ARATH (Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana GN=GRXS3 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 9.197e-15
Identity = 43/96 (44.79%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   79 QETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            Q+ +S  SVV+FSK  C    ++K LF  LGV     ELD+ S G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L  AGA+
Sbjct:    5 QKMISEKSVVIFSKNSCCMSHTIKTLFLDLGVNPTIYELDEISRGKEIEHALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRAGAL 100          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC5_ORYSJ (Putative glutaredoxin-C5 OS=Oryza sativa subsp. japonica GN=GRXC5 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 47/108 (43.52%), Postives = 59/108 (54.63%), Query Frame = 1
Query:   58 EMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTG-----QKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            E A  + +   S ++VVVFS + C  C +VK LF  +GV     ELD +  G D++ ALA   G        VP VFIGGK +G  D   A H  G LVPLL EAGA+
Sbjct:   26 ETAAERVERLASESAVVVFSVSSCCMCHAVKRLFCGMGVHPAVHELDLDPRGRDLERALARLVGAGGAAAAAVPVVFIGGKLVGAMDRVMAAHINGSLVPLLKEAGAL 133          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC1_ORYSJ (Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN=GRXC1.1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.676e-14
Identity = 40/101 (39.60%), Postives = 59/101 (58.42%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQK-TVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            + +     +  +VV+FS + C  C +V  LF +LGV    +ELD++  G +++ ALA   G+   VP VFIGG+ +G  D   +LH  G LVPLL  AGA+
Sbjct:    1 MDRVNRLAAQRAVVIFSMSSCCMCHTVTRLFCELGVNPTVVELDEDPRGKEMEKALARLLGRSPAVPAVFIGGRLVGSTDKVMSLHLSGNLVPLLRNAGAL 101          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXS4_ARATH (Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana GN=GRXS4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            + K Q+ +S  SVV+FSK  C    ++K LF   GV     ELD+ + G +I+ ALA+     TVP VFIGG+ +GG +   +LH    LVP+L   GA+
Sbjct:    1 MDKLQKMISEKSVVIFSKNSCCMSHTIKTLFIDFGVNPTIYELDEINRGKEIEQALAQLGCSPTVPVVFIGGQLVGGANQVMSLHLNRSLVPMLKRVGAL 100          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC9_ORYSJ (Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN=GRXC9 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 48/114 (42.11%), Postives = 66/114 (57.89%), Query Frame = 1
Query:   43 DKEDTEMALPKAQETV----SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWT--GQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            ++E+   A+    E V    S N+VVVFS + C  C  VK L   LGV     ELD+ +  +DIQ+AL++    GQ  VP VF+GG+ +GG +   A H  G LVPLL +AGA+
Sbjct:   77 EEEEAAAAMMSVYERVARMASGNAVVVFSASGCCMCHVVKRLLLGLGVGPAVYELDQLAAAADIQAALSQLLPPGQPPVPVVFVGGRLLGGVEKVMACHINGTLVPLLKQAGAL 190          
The following BLAST results are available for this feature:
BLAST of CF832680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GRXC8_ORYSJ7.523e-1743.48Glutaredoxin-C8 OS=Oryza sativa subsp. japonica GN... [more]
GRXC2_ORYSJ2.859e-1648.39Putative glutaredoxin-C2 OS=Oryza sativa subsp. ja... [more]
GRXS6_ORYSJ6.369e-1642.22Monothiol glutaredoxin-S6 OS=Oryza sativa subsp. j... [more]
GLRX2_YEAST6.369e-1641.44Glutaredoxin-2, mitochondrial OS=Saccharomyces cer... [more]
GLRX2_SCHPO7.042e-1540.00Glutaredoxin-2 OS=Schizosaccharomyces pombe GN=grx... [more]
GRXS3_ARATH9.197e-1544.79Monothiol glutaredoxin-S3 OS=Arabidopsis thaliana ... [more]
GRXC5_ORYSJ2.676e-1443.52Putative glutaredoxin-C5 OS=Oryza sativa subsp. ja... [more]
GRXC1_ORYSJ2.676e-1439.60Glutaredoxin-C1 OS=Oryza sativa subsp. japonica GN... [more]
GRXS4_ARATH4.564e-1441.00Monothiol glutaredoxin-S4 OS=Arabidopsis thaliana ... [more]
GRXC9_ORYSJ4.564e-1442.11Glutaredoxin-C9 OS=Oryza sativa subsp. japonica GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832680 ID=CF832680; Name=CF832680; organism=Citrus sinensis; type=EST; length=525bp
GGATTTGAAGCTCATTTAGGGTTTGTGAGATTTCGAATCAAAGACAAAGA
AGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGTTTCCTCCAATT
CCGTCGTCGTTTTCAGCAAAACGCTTTGTCCGTTCTGCGTGAGTGTCAAA
GAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATTGAACTGGACAA
AGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACTGGAC
AGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGGCTGC
GATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCAC
TGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGCTATTCTCT
GCCTGTTTATGCTAGTAATAAATAAACAATGTGTTGGTAGTGCTTAATCT
GTCTGAATTAAATATGAAATTATGCTTATTTGAGTAATTTCCAATGCACT
TTTTTGTTCAAAAAAAAAAAAAAAA
back to top