CF832680

Overview
NameCF832680
Unique NameCF832680
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length525
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1793 contig Csv1_Contig1793:176..700. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GLRX1_BOVIN (Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 3.616e-11
Identity = 37/105 (35.24%), Postives = 54/105 (51.43%), Query Frame = 1
Query:   61 MALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVT---FKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            MA       +    VVVF K  CP+C   +EL  QL       + +++    + S+IQ  L + TG +TVP VFIG + IGGC     +H  G+L+  L + GA+
Sbjct:    1 MAQAFVNSKIQPGKVVVFIKPTCPYCRKTQELLSQLPFKQGLLEFVDITAAGNISEIQDYLQQLTGARTVPRVFIGQECIGGCTDLVNMHERGELLTRLKQMGAL 105          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXS2_ARATH (Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana GN=GRXS2 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 35/93 (37.63%), Postives = 50/93 (53.76%), Query Frame = 1
Query:   88 VSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            V    VV++SK+ C    ++K L    G      ELD+ S G +I+ AL        VP VFIGG+ +GG +   +LH  G L+P+L  AGA+
Sbjct:    8 VMERPVVIYSKSSCCMSHTIKTLLCDFGANPAVYELDEISRGREIEQALLRLGCSPAVPGVFIGGELVGGANEVMSLHLNGSLIPMLKRAGAL 100          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC12_ORYSJ (Putative glutaredoxin-C12 OS=Oryza sativa subsp. japonica GN=GRXC12 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.723e-11
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   91 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            S  +VVVF+K+ C  C +V  L  +L V+    ELD+E  G +++  LA         G   VP VFIGG  +GG      +H +G+LVP+L  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGGTSKVMTVHLKGELVPMLKSAGAL 107          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRC13_ORYSJ (Glutaredoxin-C13 OS=Oryza sativa subsp. japonica GN=GRXC13 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 6.169e-11
Identity = 38/98 (38.78%), Postives = 54/98 (55.10%), Query Frame = 1
Query:   91 SSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAE------WTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            S  +VVVF+K+ C  C +V  L  +L V+    ELD+E  G +++  LA         G   VP VFIGG  +G      A+H +G+LVP+L  AGA+
Sbjct:   10 SERAVVVFTKSGCCMCTAVTTLLGELAVSAAVHELDREPLGKEMERELARRLYGSGGRGGPAVPAVFIGGSLVGSTSKVMAMHLKGELVPMLKNAGAL 107          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXS9_ARATH (Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana GN=GRXS9 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 36/94 (38.30%), Postives = 51/94 (54.26%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLL 348
            + K     S   VV+FSK+ C    +V+ LFQ LGV     E+DK+ +  +I+ AL        VP +F+GGK IG  +   +LH  G LVPL+
Sbjct:    1 MDKVVRMSSEKGVVIFSKSSCCMSYAVQVLFQDLGVHPTVHEIDKDPECREIEKALMRLGCSTPVPAIFVGGKLIGSTNEVMSLHLSGSLVPLV 94          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXS1_ARATH (Putative monothiol glutaredoxin-S1 OS=Arabidopsis thaliana GN=GRXS1 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 37/100 (37.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:   67 LPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALAEWTGQKTVPNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            + K    +    VV+FSKT C    S+K L    G      ELD+ S+G +I+ AL E   + TVP VFIG + +GG +   +L    +L  LL  AGA+
Sbjct:    1 MEKISNLLEDKPVVIFSKTSCCMSHSIKSLISGYGANSTVYELDEMSNGPEIERALVELGCKPTVPAVFIGQELVGGANQLMSLQVRNQLASLLRRAGAI 100          
BLAST of CF832680 vs. ExPASy Swiss-Prot
Match: GRXC6_ARATH (Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 8.057e-11
Identity = 43/115 (37.39%), Postives = 67/115 (58.26%), Query Frame = 1
Query:   37 IKDKEDTEMALPKAQETVSSNSVVVFSKTLCPFCVSVKELFQQLGVTFKAIELDKESDGSDIQSALA-EWTGQKTV----PNVFIGGKHIGGCDSTTALHREGKLVPLLTEAGAV 366
            I ++E TE    K +  +S + V++FS++ C  C  +K L   +GV    IELD + + S + +AL  E++G  +V    P VFIG + +GG +S  ALH  G+LVP L + GA+
Sbjct:   32 IDEEESTEA---KIRRLISEHPVIIFSRSSCCMCHVMKRLLATIGVIPTVIELD-DHEVSSLPTALQDEYSGGVSVVGPPPAVFIGRECVGGLESLVALHLSGQLVPKLVQVGAL 142          
The following BLAST results are available for this feature:
BLAST of CF832680 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
GLRX1_BOVIN3.616e-1135.24Glutaredoxin-1 OS=Bos taurus GN=GLRX PE=1 SV=3[more]
GRXS2_ARATH4.723e-1137.63Monothiol glutaredoxin-S2 OS=Arabidopsis thaliana ... [more]
GRC12_ORYSJ4.723e-1138.78Putative glutaredoxin-C12 OS=Oryza sativa subsp. j... [more]
GRC13_ORYSJ6.169e-1138.78Glutaredoxin-C13 OS=Oryza sativa subsp. japonica G... [more]
GRXS9_ARATH8.057e-1138.30Monothiol glutaredoxin-S9 OS=Arabidopsis thaliana ... [more]
GRXS1_ARATH8.057e-1137.00Putative monothiol glutaredoxin-S1 OS=Arabidopsis ... [more]
GRXC6_ARATH8.057e-1137.39Glutaredoxin-C6 OS=Arabidopsis thaliana GN=GRXC6 P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02E03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832680 ID=CF832680; Name=CF832680; organism=Citrus sinensis; type=EST; length=525bp
GGATTTGAAGCTCATTTAGGGTTTGTGAGATTTCGAATCAAAGACAAAGA
AGACACAGAAATGGCTTTGCCCAAGGCCCAGGAAACCGTTTCCTCCAATT
CCGTCGTCGTTTTCAGCAAAACGCTTTGTCCGTTCTGCGTGAGTGTCAAA
GAGCTGTTTCAGCAACTCGGAGTCACTTTCAAGGCCATTGAACTGGACAA
AGAAAGTGATGGAAGTGACATTCAATCAGCTCTAGCTGAGTGGACTGGAC
AGAAAACTGTTCCAAATGTCTTCATCGGAGGGAAACACATTGGTGGCTGC
GATTCAACTACTGCACTGCACAGGGAAGGGAAGCTGGTTCCTCTGCTCAC
TGAAGCTGGAGCTGTTGCCAAGACAGCTGCCTAAGGGATGGCTATTCTCT
GCCTGTTTATGCTAGTAATAAATAAACAATGTGTTGGTAGTGCTTAATCT
GTCTGAATTAAATATGAAATTATGCTTATTTGAGTAATTTCCAATGCACT
TTTTTGTTCAAAAAAAAAAAAAAAA
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