CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPY (Xylose isomerase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPS (Xylose isomerase OS=Yersinia pseudotuberculosis GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPP (Xylose isomerase OS=Yersinia pestis (strain Pestoides F) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPN (Xylose isomerase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPG (Xylose isomerase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPE (Xylose isomerase OS=Yersinia pestis GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPB (Xylose isomerase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERPA (Xylose isomerase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_YERP3 (Xylose isomerase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=xylA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 7.160e-34
Identity = 72/138 (52.17%), Postives = 93/138 (67.39%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AAK+IEDG L ++V KRY  ++SE+GQ+I  GK   E L + A +    P+  S  QEL E
Sbjct:  293 GSVDANRGDPQLGWDTDQFPNSVEENTLVMFEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKFAAKMIEDGQLDQIVAKRYAGWNSELGQQILQGKMSLEELSRYASQHNLNPQHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BACV8 (Xylose isomerase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=xylA PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 1.595e-33
Identity = 75/139 (53.96%), Postives = 92/139 (66.19%), Query Frame = -3 
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+IDAN GD Q GWDTDQF  D  E T  M+ +I+NGGL  GG NFDAK RR STD+ED+FIAHI GMD +AR L +AA L+ +    +++  RY SFDS  G++ E GK   E +   A + GEPK  S KQEL E I
Sbjct:  295 GSIDANRGDYQNGWDTDQFPIDNYELTQAMMQIIRNGGLGNGGTNFDAKTRRNSTDLEDIFIAHIAGMDAMARALESAAALLNESPYCKMLSDRYASFDSGKGKEFEEGKLTLEDVVAYAKQNGEPKQVSGKQELYEAI 433
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_YERPY7.160e-3452.17Xylose isomerase OS=Yersinia pseudotuberculosis se... [more]
XYLA_YERPS7.160e-3452.17Xylose isomerase OS=Yersinia pseudotuberculosis GN... [more]
XYLA_YERPP7.160e-3452.17Xylose isomerase OS=Yersinia pestis (strain Pestoi... [more]
XYLA_YERPN7.160e-3452.17Xylose isomerase OS=Yersinia pestis bv. Antiqua (s... [more]
XYLA_YERPG7.160e-3452.17Xylose isomerase OS=Yersinia pestis bv. Antiqua (s... [more]
XYLA_YERPE7.160e-3452.17Xylose isomerase OS=Yersinia pestis GN=xylA PE=3 S... [more]
XYLA_YERPB7.160e-3452.17Xylose isomerase OS=Yersinia pseudotuberculosis se... [more]
XYLA_YERPA7.160e-3452.17Xylose isomerase OS=Yersinia pestis bv. Antiqua (s... [more]
XYLA_YERP37.160e-3452.17Xylose isomerase OS=Yersinia pseudotuberculosis se... [more]
XYLA_BACV81.595e-3353.96Xylose isomerase OS=Bacteroides vulgatus (strain A... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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