CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUSU (Xylose isomerase OS=Brucella suis GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDSQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUSI (Xylose isomerase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEKALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUME (Xylose isomerase OS=Brucella melitensis GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUMB (Xylose isomerase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUC2 (Xylose isomerase OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUAB (Xylose isomerase OS=Brucella abortus GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUA2 (Xylose isomerase OS=Brucella abortus (strain 2308) GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BRUA1 (Xylose isomerase OS=Brucella abortus (strain S19) GN=xylA PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.935e-25
Identity = 59/139 (42.45%), Postives = 86/139 (61.87%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D +DL I HI GMD  ARGL+ AA+++EDG+L + + +RY  ++ E G+++ +G +  ++  +   +   P+  S +QE  E I
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYQVLLAGGFTTGGTNFDAKLRRQSLDPQDLLIGHIGGMDCCARGLKAAARMLEDGALSKPLDERYAGWNGEFGKRLLSGLSLDQIAGEVEAKDINPQPKSGRQEYLENI 430          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_BIFLD (Xylose isomerase OS=Bifidobacterium longum (strain DJO10A) GN=xylA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.353e-24
Identity = 57/123 (46.34%), Postives = 79/123 (64.23%), Query Frame = -3
Query:  339 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAP-GGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAME 704
            G++DAN GD  +GWD D+F TD+ E   +M  V++ G + P GG NFDAK RR S   EDLF +HI GMDT A GL  A K+ +DG + +L+ +RY S+DS IG+ I+ G      LE  +++
Sbjct:  293 GSLDANQGDKLIGWDMDEFPTDLYETVAVMWEVLQAGSIGPHGGLNFDAKPRRTSFYEEDLFRSHIAGMDTYAAGLLVADKMNQDGFIQDLMAERYSSYDSGIGKDIDEGNVTLADLEAYSLD 415          
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_RHIE6 (Xylose isomerase OS=Rhizobium etli (strain CIAT 652) GN=xylA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.768e-24
Identity = 64/144 (44.44%), Postives = 82/144 (56.94%), Query Frame = -3
Query:  288 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGE-----PKVPSAKQELAEMI 704
            G+ID N  D Q GWDTDQF  ++ E  L    V+  GG   GG NFDAKLRR+S D  DL I HI GMD  ARGL+ AAK+IED +L + +  RY  ++S   QK+  G+   +    +   W E     P+  S KQEL E +
Sbjct:  292 GSIDMNRNDYQSGWDTDQFPNNVPEMALAYYHVLAGGGFKTGGTNFDAKLRRQSLDPADLLIGHIGGMDCCARGLKAAAKMIEDKALSQPLADRYAGWESAEAQKLFRGEYSLD----EITNWVESHDVNPQPKSGKQELLENV 431          
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_BRUSU7.935e-2542.45Xylose isomerase OS=Brucella suis GN=xylA PE=3 SV=... [more]
XYLA_BRUSI7.935e-2542.45Xylose isomerase OS=Brucella suis (strain ATCC 234... [more]
XYLA_BRUME7.935e-2542.45Xylose isomerase OS=Brucella melitensis GN=xylA PE... [more]
XYLA_BRUMB7.935e-2542.45Xylose isomerase OS=Brucella melitensis biotype 2 ... [more]
XYLA_BRUC27.935e-2542.45Xylose isomerase OS=Brucella canis (strain ATCC 23... [more]
XYLA_BRUAB7.935e-2542.45Xylose isomerase OS=Brucella abortus GN=xylA PE=3 ... [more]
XYLA_BRUA27.935e-2542.45Xylose isomerase OS=Brucella abortus (strain 2308)... [more]
XYLA_BRUA17.935e-2542.45Xylose isomerase OS=Brucella abortus (strain S19) ... [more]
XYLA_BIFLD1.353e-2446.34Xylose isomerase OS=Bifidobacterium longum (strain... [more]
XYLA_RHIE61.768e-2444.44Xylose isomerase OS=Rhizobium etli (strain CIAT 65... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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