CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOSE (Xylose isomerase OS=Escherichia coli (strain SE11) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOLU (Xylose isomerase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOLC (Xylose isomerase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOL6 (Xylose isomerase OS=Escherichia coli O6 GN=xylA PE=3 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOL5 (Xylose isomerase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECOHS (Xylose isomerase OS=Escherichia coli O9:H4 (strain HS) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO8A (Xylose isomerase OS=Escherichia coli O8 (strain IAI1) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO81 (Xylose isomerase OS=Escherichia coli O81 (strain ED1a) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO7I (Xylose isomerase OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO55 (Xylose isomerase OS=Escherichia coli (strain 55989 / EAEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.070e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_ECOSE1.070e-2947.83Xylose isomerase OS=Escherichia coli (strain SE11)... [more]
XYLA_ECOLU1.070e-2947.83Xylose isomerase OS=Escherichia coli O17:K52:H18 (... [more]
XYLA_ECOLC1.070e-2947.83Xylose isomerase OS=Escherichia coli (strain ATCC ... [more]
XYLA_ECOL61.070e-2947.83Xylose isomerase OS=Escherichia coli O6 GN=xylA PE... [more]
XYLA_ECOL51.070e-2947.83Xylose isomerase OS=Escherichia coli O6:K15:H31 (s... [more]
XYLA_ECOHS1.070e-2947.83Xylose isomerase OS=Escherichia coli O9:H4 (strain... [more]
XYLA_ECO8A1.070e-2947.83Xylose isomerase OS=Escherichia coli O8 (strain IA... [more]
XYLA_ECO811.070e-2947.83Xylose isomerase OS=Escherichia coli O81 (strain E... [more]
XYLA_ECO7I1.070e-2947.83Xylose isomerase OS=Escherichia coli O7:K1 (strain... [more]
XYLA_ECO551.070e-2947.83Xylose isomerase OS=Escherichia coli (strain 55989... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
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