CF832741

Overview
NameCF832741
Unique NameCF832741
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length706
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig841 contig Csv1_Contig841:145..851. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_PHOPR (Xylose isomerase OS=Photobacterium profundum GN=xylA PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.113e-29
Identity = 67/145 (46.21%), Postives = 90/145 (62.07%), Query Frame = -3 
Query:  273 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAEMIFQSAI 704
            G+IDAN GDPQ+GWDTDQF   + E TL+M  ++K GG   GGFNFD+ +RR S D EDLF  HI GMDT+A  L  AA +IE+  L + + +RY  ++ ++G+KI +G    E L K A++    P   S +QE  E I    I
Sbjct:  293 GSIDANRGDPQLGWDTDQFPNSVEENTLVMYEILKAGGFTTGGFNFDSHVRRPSIDAEDLFYGHIGGMDTMALALERAANMIENDVLSKNIAQRYAGWNEDLGKKILSGDHSLETLAKFALDSNIAPVKESGRQEHLENIVNGFI 437
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_XANOM (Xylose isomerase OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=xylA1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 70/137 (51.09%), Postives = 85/137 (62.04%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L +   +RY SFD+  G    AGK     L   A     PK  S +QE  E
Sbjct:  301 GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTSSPLEQWRAERYASFDNGTGADFAAGKITLADLAAHA-AGNAPKQISGRQEAYE 436
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SHIBS (Xylose isomerase OS=Shigella boydii serotype 4 (strain Sb227) GN=xylA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = -3 
Query:  339 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAME 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA++IEDG L + + +RY  ++SE+GQ+I  G+     L K A E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAARMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQE 414
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALG2 (Xylose isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=xylA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++SE+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNSELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALEP (Xylose isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=xylA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++SE+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNSELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_SALDC (Xylose isomerase OS=Salmonella dublin (strain CT_02021853) GN=xylA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 66/138 (47.83%), Postives = 88/138 (63.77%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA+++EDG L + V KRY  ++SE+GQ+I  G+     L + A +    P   S  QEL E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNSELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO5E (Xylose isomerase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=xylA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 66/138 (47.83%), Postives = 87/138 (63.04%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA +IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAACMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA_ECO57 (Xylose isomerase OS=Escherichia coli O157:H7 GN=xylA PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 66/138 (47.83%), Postives = 87/138 (63.04%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWG-EPKVPSAKQELAE 704
            G++DAN GD Q+GWDTDQF   + E  L+M  ++K GG   GG NFDAK+RR+STD  DLF  HI  MDT+A  L+ AA +IEDG L + + +RY  ++SE+GQ+I  G+     L K A E    P   S +QE  E
Sbjct:  293 GSVDANRGDAQLGWDTDQFPNSVEENALVMYEILKAGGFTTGGLNFDAKVRRQSTDKYDLFYGHIGAMDTMALALKIAACMIEDGELDKRIAQRYSGWNSELGQQILKGQMSLADLAKYAQEHNLSPVHQSGRQEQLE 430
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA2_XANOR (Xylose isomerase 2 OS=Xanthomonas oryzae pv. oryzae GN=xylA2 PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 70/137 (51.09%), Postives = 85/137 (62.04%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L +   +RY SFD+  G    AGK     L   A     PK  S +QE  E
Sbjct:  301 GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTSSPLEQWRAERYASFDNGTGADFAAGKITLADLAAHA-AGNAPKQISGRQEAYE 436
[Close]
BLAST of CF832741 vs. ExPASy Swiss-Prot
Match: XYLA1_XANOR (Xylose isomerase 1 OS=Xanthomonas oryzae pv. oryzae GN=xylA1 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.066e-29
Identity = 70/137 (51.09%), Postives = 85/137 (62.04%), Query Frame = -3 
Query:  294 GNIDANTGDPQVGWDTDQFLTDIGEATLIMLSVIKNGGLAPGGFNFDAKLRRESTDVEDLFIAHIVGMDTVARGLRTAAKLIEDGSLPELVRKRYQSFDSEIGQKIEAGKADFEMLEKKAMEWGEPKVPSAKQELAE 704
            G+IDAN G+PQ GWDTDQF TD+ +    ML V++ GGLAPGG NFDAK+RRES+D +DLF+AHI GMD  ARGL  A  L+    L +   +RY SFD+  G    AGK     L   A     PK  S +QE  E
Sbjct:  301 GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTSSPLEQWRAERYASFDNGTGADFAAGKITLADLAAHA-AGNAPKQISGRQEAYE 436
The following BLAST results are available for this feature:
BLAST of CF832741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
XYLA_PHOPR3.113e-2946.21Xylose isomerase OS=Photobacterium profundum GN=xy... [more]
XYLA_XANOM4.066e-2951.09Xylose isomerase OS=Xanthomonas oryzae pv. oryzae ... [more]
XYLA_SHIBS4.066e-2950.00Xylose isomerase OS=Shigella boydii serotype 4 (st... [more]
XYLA_SALG24.066e-2947.83Xylose isomerase OS=Salmonella gallinarum (strain ... [more]
XYLA_SALEP4.066e-2947.83Xylose isomerase OS=Salmonella enteritidis PT4 (st... [more]
XYLA_SALDC4.066e-2947.83Xylose isomerase OS=Salmonella dublin (strain CT_0... [more]
XYLA_ECO5E4.066e-2947.83Xylose isomerase OS=Escherichia coli O157:H7 (stra... [more]
XYLA_ECO574.066e-2947.83Xylose isomerase OS=Escherichia coli O157:H7 GN=xy... [more]
XYLA2_XANOR4.066e-2951.09Xylose isomerase 2 OS=Xanthomonas oryzae pv. oryza... [more]
XYLA1_XANOR4.066e-2951.09Xylose isomerase 1 OS=Xanthomonas oryzae pv. oryza... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_02F15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832741 ID=CF832741; Name=CF832741; organism=Citrus sinensis; type=EST; length=706bp
CTTTTTTTTTTTTCCAAATTGAACTTCGATCATTATTAAAGCAATGTTAT
TGACAAAAGATTTCAAGATCGTAGGATTCAAGTTTTATAACAGCTGTCAT
ATCGATAACTAAACAAGTTCTTTATAAAGCCTAAGCTAGACAAACATGTC
AAAATTTCCCCGCATGAAAAGACCCATTTCCCCAAGAGGGTTCACTGACT
GGAGACAAACATAACTTCAATTTGCCCCTCTCTCTTTATTTGTAAGTTCT
GCTTCGGAGCAGCCGCTATCTATATTGCAGATTGGAAGATCATTTCTGCA
AGTTCCTGCTTAGCAGAGGGAACCTTGGGTTCTCCCCATTCCATGGCCTT
CTTCTCAAGCATTTCAAAATCAGCCTTACCAGCCTCTATTTTTTGCCCAA
TCTCTGAGTCAAAGCTCTGGTATCGCTTGCGGACAAGCTCCGGTAGAGAA
CCATCCTCAATCAGCTTGGCAGCAGTTCGAAGTCCACGAGCAACGGTATC
CATTCCAACAATATGAGCAATGAACAAGTCTTCAACGTCAGTGCTCTCTC
TTCGTAATTTTGCATCAAAGTTGAATCCTCCAGGTGCCAAACCTCCATTT
TTAATCACACTGAGCATAATCAAAGTAGCCTCTCCAATATCTGTCAGGAA
TTGATCTGTATCCCAACCAACTTGAGGGTCACCAGTGTTTGCATCGATGT
TTCCTA
back to top