CF832749

Overview
NameCF832749
Unique NameCF832749
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1113 contig Csv1_Contig1113:319..791. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.142e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   68 QVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 147.902 bits (372), Expect = 2.142e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   73 QVHPDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.798e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 QVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 2.798e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   62 QVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 3.654e-35
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   71 QVHPDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 147.132 bits (370), Expect = 3.654e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   68 QVHPDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.773e-35
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   63 QVHPDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 146.362 bits (368), Expect = 6.233e-35
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 231
            QVHPD+GIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   62 QVHPDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.233e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   75 QVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CF832749 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 6.233e-35
Identity = 74/78 (94.87%), Postives = 77/78 (98.72%), Query Frame = 1
Query:    1 QVHPDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 234
            QVHPDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   75 QVHPDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
The following BLAST results are available for this feature:
BLAST of CF832749 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B7_ARATH2.142e-3596.15Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH2.142e-3596.15Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B11_ORYSJ2.798e-3596.15Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI2.798e-3596.15Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_MEDTR3.654e-3596.15Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B10_ARATH3.654e-3596.15Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_SOLLC4.773e-3596.15Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B4_ARATH6.233e-3594.81Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B1_ORYSJ6.233e-3594.87Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI6.233e-3594.87Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_02F24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa02F24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832749 ID=CF832749; Name=CF832749; organism=Citrus sinensis; type=EST; length=474bp
CAGGTACATCCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAA
CAGTTTCATCAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGC
TTGCAAGGTACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACC
GCTGTGAGACTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGA
GGGTACCAAAGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTG
CATCGGTCGGTGAATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTA
GGCCTTTAATTTTACTAGATGAAGTCGTTTTTATGTTTTGTGTTTTCAAA
TCTTTGGTGGATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCT
GATCCAGGTGATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATAT
GATTTCGGAAAAAAAAAAAAAAAA
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